Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G012500.1 |
Family | PL1 |
Protein Properties | Length: 386 Molecular Weight: 42359.8 Isoelectric Point: 9.5696 |
Chromosome | Chromosome/Scaffold: 11 Start: 887653 End: 889611 |
Description | root hair specific 14 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 106 | 306 | 0 |
LWIIFARDMVIKLKNELIVNSFKTIDGRGAKVEIAYGPCITIQGVTNVIIHGISIHDCKPGMAGRVRSSPTHVGMRGGSDGDAINVFASSNIWIDHCYLA RAKDGLIDVIHASTSVTISNNYFTQHDKVMLLGHNDKFIADKVMKVTLVFNHFGEGLIERMPRVRIGYAHVANNKYDEWKMYAIGGSANPTIFSEGNYFV A |
Full Sequence |
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Protein Sequence Length: 386 Download |
MASLSCLVLL SLIFSNFPHS LAGYYTSKPL AYNVPKKPMN VIDSCWRTKS DWAINRKALA 60 DCVVGYGKAT LGGKYGAIYV VTSPYDDPVN PKPGTLRYGV IQSVPLWIIF ARDMVIKLKN 120 ELIVNSFKTI DGRGAKVEIA YGPCITIQGV TNVIIHGISI HDCKPGMAGR VRSSPTHVGM 180 RGGSDGDAIN VFASSNIWID HCYLARAKDG LIDVIHASTS VTISNNYFTQ HDKVMLLGHN 240 DKFIADKVMK VTLVFNHFGE GLIERMPRVR IGYAHVANNK YDEWKMYAIG GSANPTIFSE 300 GNYFVAPDNR SSKQVTKREA TNWQNWKWQS SKDVFINGAY FVPSGYGSSA PLYTRVQSFT 360 VAPGYMVPVL TSNAGPLHCL VGKPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-27 | 119 | 304 | 198 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-65 | 119 | 304 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-76 | 113 | 308 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172656.1 | 0 | 1 | 385 | 1 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_193939.1 | 0 | 1 | 385 | 3 | 393 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263615.1 | 0 | 1 | 385 | 1 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317132.1 | 0 | 1 | 385 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 28 | 385 | 29 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 40 | 375 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 40 | 375 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-19 | 108 | 306 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 1e-16 | 132 | 304 | 140 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.00000000000007 | 117 | 375 | 78 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |