Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G041500.1 |
Family | CBM43 |
Protein Properties | Length: 124 Molecular Weight: 13418.3 Isoelectric Point: 7.7655 |
Chromosome | Chromosome/Scaffold: 11 Start: 3083596 End: 3084561 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 35 | 121 | 1e-31 |
WCVAKPSTDDKALVSNINYACEQLGILGFNCSQIQPGGACYDPNTYINHASSVMNSYYQANGRQEHNCNFQGSGLITISDPSYGNCQ |
Full Sequence |
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Protein Sequence Length: 124 Download |
MAKSPVSLPL LYFLLLLSFN SGILLKLANG QVKKWCVAKP STDDKALVSN INYACEQLGI 60 LGFNCSQIQP GGACYDPNTY INHASSVMNS YYQANGRQEH NCNFQGSGLI TISDPSYGNC 120 QYP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-16 | 34 | 108 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 8.0e-33 | 34 | 122 | 89 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU14756.1 | 4e-37 | 1 | 122 | 1 | 121 | unknown [Glycine max] |
RefSeq | NP_001042566.1 | 3e-31 | 19 | 122 | 23 | 120 | Os01g0243700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_177973.4 | 8e-32 | 1 | 122 | 1 | 114 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_181895.2 | 1e-31 | 1 | 122 | 1 | 117 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
RefSeq | XP_002519722.1 | 3e-30 | 6 | 122 | 3 | 114 | hypothetical protein RCOM_0633850 [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 7e-26 | 35 | 123 | 13 | 97 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |