y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G041700.1 |
Family | GT5 |
Protein Properties | Length: 1040 Molecular Weight: 117649 Isoelectric Point: 6.0648 |
Chromosome | Chromosome/Scaffold: 11 Start: 3090522 End: 3102735 |
Description | starch synthase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 543 | 1026 | 0 |
IVHIAAEMAPVAKVGGLGDVVTGLGKTLQKKGHLVEIILPKYDCMQYDGIYDLRALDVTVESYFDGKLFQNKIWVGTVEGLPVYFIEPHHPNKFFWRGQY YGEHDDFKRFSFFSRAALEFLLQAGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGTASASELASCGLDAQELNRPDRMQDNTAHD SVNPVKGAIVFSNIVTTVSPTYAQEVRTAEGGKGLHSTLNSHSRKFMGILNGIDTDAWNPATDNFLKVQYSANDMQGKAENKAATRRNLGLSSADDQRPL VGCITRLVPQKGVHLIKHAIYRTLEMGGQFVLLGSSPVLHIQREFEGIANQFQNHEHIRLILKYDESLSHAIYAASDMFIIPSIFEPCGLTQMIAMRYGS VPIARKTGGLNDSVFDVNEETIPNQIRNGFTFTTPDEQGINGALERAFNFYKNNKESWKQLVQKNMNIDFSWDSSASRYEELYA |
Full Sequence |
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Protein Sequence Length: 1040 Download |
MSAKLSACFF SHGFSCLSNS SYKNTVDKHK NVYMRVLFLP SRQFLPAYCK MRQRNLSSNH 60 KRQRMSKPPE RIPTSAELLP IRDEESEPEN SFPNGVDVEP FVNHETSGKD DVNTVIDVEN 120 IAEQNSGTLS ASAGDVESTS EQIINGLVLP SVTKALAING EQLSSMQLED LVGMIKNAER 180 NILVLNQARV HALEDIHKVL DEKETLQGEI NILEMRLAEA DARIKVASQG KIHVEFLESQ 240 LEMLRNELTD RGELELYENQ KKFSNEELLS THDDHSLNKE VDSLRTENLA LKNDIQALKS 300 MISNVKNTDE RMATLENECS FLGSSVKELE SKLLVSQQDS PKSSTLKVEY QELWEKVENL 360 QQLFDTATKQ ADQATLVLQQ NQDLRKKVYK LEKSLEEVNV LKVSSDKMQQ SNELIQKKIK 420 LLEERLQKSD QEIYSFVQLY QESLEAFQDT LNSLKEESKK RTSDALVDDM PREFWSRLLL 480 TIDGWVLEKK ISNSDAKLLR ELVWKKDRCI RDAHIACKEK NEREVISTFL RLASSQASPG 540 LYIVHIAAEM APVAKVGGLG DVVTGLGKTL QKKGHLVEII LPKYDCMQYD GIYDLRALDV 600 TVESYFDGKL FQNKIWVGTV EGLPVYFIEP HHPNKFFWRG QYYGEHDDFK RFSFFSRAAL 660 EFLLQAGKKP DIIHCHDWQT AFVAPLYWDL YAPKGLNSAR ICFTCHNFEY QGTASASELA 720 SCGLDAQELN RPDRMQDNTA HDSVNPVKGA IVFSNIVTTV SPTYAQEVRT AEGGKGLHST 780 LNSHSRKFMG ILNGIDTDAW NPATDNFLKV QYSANDMQGK AENKAATRRN LGLSSADDQR 840 PLVGCITRLV PQKGVHLIKH AIYRTLEMGG QFVLLGSSPV LHIQREFEGI ANQFQNHEHI 900 RLILKYDESL SHAIYAASDM FIIPSIFEPC GLTQMIAMRY GSVPIARKTG GLNDSVFDVN 960 EETIPNQIRN GFTFTTPDEQ GINGALERAF NFYKNNKESW KQLVQKNMNI DFSWDSSASR 1020 YEELYAKSIS RARAQASNN* 1080 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02316 | PLN02316 | 1.0e-143 | 539 | 1025 | 494 | + synthase/transferase | ||
PLN02939 | PLN02939 | 0 | 1 | 1036 | 1037 | + transferase, transferring glycosyl groups | ||
TIGR02095 | glgA | 0 | 541 | 1028 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 543 | 1027 | 487 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
PRK00654 | glgA | 0 | 541 | 1025 | 488 | + glycogen synthase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB40375.1 | 0 | 174 | 1034 | 1 | 870 | starch synthase, isoform V [Vigna unguiculata] |
RefSeq | NP_193558.3 | 5e-16 | 1 | 202 | 1 | 219 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | NP_193558.3 | 0 | 302 | 1034 | 303 | 1035 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002274716.1 | 0 | 1 | 1036 | 1 | 1009 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298514.1 | 0 | 147 | 1034 | 8 | 883 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rzv_B | 0 | 543 | 1032 | 3 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzv_A | 0 | 543 | 1032 | 3 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzu_B | 0 | 543 | 1032 | 3 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
PDB | 1rzu_A | 0 | 543 | 1032 | 3 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
PDB | 3d1j_A | 0 | 543 | 1027 | 3 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO851132 | 333 | 616 | 948 | 0 |
CF828776 | 286 | 666 | 951 | 0 |
GW865616 | 298 | 647 | 944 | 0 |
CB893818 | 289 | 532 | 820 | 0 |
EL448877 | 316 | 469 | 784 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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