| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.011G052300.3 |
| Family | CBM57 |
| Protein Properties | Length: 719 Molecular Weight: 78893.2 Isoelectric Point: 5.8502 |
| Chromosome | Chromosome/Scaffold: 11 Start: 4082495 End: 4090238 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM57 | 430 | 591 | 3.2e-28 |
| SLNCGGPAIIADGIQFEAENRTLGPAKFNVTSTQKWAVSNAGLFADRQNQQFVENNGGQVRSTNTPELYETSRISPGSLRYYGLGLENGPYTVRLFFAET GFPERTSGSWRSLARRVFDVYIQGARRLRDFDISKEAGGVQRAISRNFTTNVTANHLEIHLF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 719 Download |
| MMKPPLSSSK GLLFFYLVVL FSCSQSIDAQ TNQTNATTDP SEVRALISIF QQWDLQAPDT 60 WNISGEPCSG TALTTSFSEF EDPSNNPAIR CDCSFNASTV CHITSLRVFG LDKRGVIPDE 120 ILELPYLDFL KIDKNFFSGS LPAFIGNLSR LGLLSIAQNN FSGPIPKEIG NLKKLYLLSL 180 GNNDLSGTLP PELGNLVELG ELYINSCGLS AEIPSSFANL KEMRIVWASD NAFTGKIPDF 240 VGNWTKLTQL RFEGNSFEGP IPSSFSNLTS LNSLRIGDIY NGSSSSLDFV RNLKNLTDLV 300 LRNVLLTGNF PSYITELQSL QKLDLSFNNL TGQIPSTLFN MNSLIYLFLG NNSLSGSIPS 360 QKSETLQTID LSYNFLSGNL PSWVNSRLQL NFVANNFTLN SSNIRVLPGL ECLQRSFPCF 420 RNAPRYANFS LNCGGPAIIA DGIQFEAENR TLGPAKFNVT STQKWAVSNA GLFADRQNQQ 480 FVENNGGQVR STNTPELYET SRISPGSLRY YGLGLENGPY TVRLFFAETG FPERTSGSWR 540 SLARRVFDVY IQGARRLRDF DISKEAGGVQ RAISRNFTTN VTANHLEIHL FWAGKGTSGT 600 PEDGYYGPSI SAISVVPNFI PTVSGIPPSN PKEKNHTALI AGVTVPVVAL ALILIFAIIY 660 VKRKKEDDDE EVLLGISPRP NTFTYSELKA ATEDFSPSNK LGEGGFGPVY KVNDVKHF* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 2.0e-31 | 106 | 382 | 282 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 8.0e-32 | 115 | 398 | 290 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 1.0e-34 | 102 | 414 | 321 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 3.0e-36 | 115 | 381 | 269 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 1.0e-47 | 428 | 613 | 190 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI39026.1 | 0 | 35 | 711 | 40 | 715 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002272404.1 | 0 | 43 | 711 | 3 | 672 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002273016.1 | 0 | 30 | 711 | 35 | 717 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002297945.1 | 0 | 15 | 711 | 20 | 711 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002303698.1 | 0 | 39 | 711 | 15 | 682 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ogq_A | 1e-22 | 39 | 335 | 4 | 285 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 1ogq_A | 0.000000002 | 260 | 393 | 67 | 202 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rj0_A | 6e-22 | 115 | 390 | 405 | 703 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rj0_A | 1e-20 | 114 | 381 | 452 | 718 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rj0_A | 1e-19 | 127 | 394 | 222 | 493 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
