y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G064300.3 |
Family | AA3 |
Protein Properties | Length: 499 Molecular Weight: 55454.4 Isoelectric Point: 10.3249 |
Chromosome | Chromosome/Scaffold: 11 Start: 5444001 End: 5447842 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 64 | 491 | 0 |
GWDARLVNESYPWVEKQIVHQPKLAPWQDAFKDSLLDVGVSPYNGFTYDHIYGTKVGGTIFDRFGRRHTAAELLASANPKMLTVLVYATVQKVLFDKSAG KRPKAMGVMFKDENGNQHQAFLTNNRRSEVILSCGAIGTPQLLMLSGIGPKAELQRLNISMVLHNEFVGKGMADNPMNSVFVPMTRSVEQSLIQTVGITK MGVYIEASSGFGQSQDSIHCHHGLLSAEIGQLSTVPPKQRTRQAIEEFIKRKRDLPREAFKGGFILEKIAMPLSTGHLNLINTNIDNNPSVTFNYFGHPR DLRRCVNGIRMAAKVIQSDRFTNFTKCDKPTVERLLNMSVKANINFIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDPNHKVLGTRRLRIVDGST FSESPGTNPQGTVLMMGRYMGVKILRRR |
Full Sequence |
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Protein Sequence Length: 499 Download |
MPMSPSSETS TSPWLTLPQP LLPNLSFPPM VLLMLGLGFW VVALALMLAF IPELTQSIFI 60 RRVGWDARLV NESYPWVEKQ IVHQPKLAPW QDAFKDSLLD VGVSPYNGFT YDHIYGTKVG 120 GTIFDRFGRR HTAAELLASA NPKMLTVLVY ATVQKVLFDK SAGKRPKAMG VMFKDENGNQ 180 HQAFLTNNRR SEVILSCGAI GTPQLLMLSG IGPKAELQRL NISMVLHNEF VGKGMADNPM 240 NSVFVPMTRS VEQSLIQTVG ITKMGVYIEA SSGFGQSQDS IHCHHGLLSA EIGQLSTVPP 300 KQRTRQAIEE FIKRKRDLPR EAFKGGFILE KIAMPLSTGH LNLINTNIDN NPSVTFNYFG 360 HPRDLRRCVN GIRMAAKVIQ SDRFTNFTKC DKPTVERLLN MSVKANINFI PKHTNDTKSL 420 EQFCKDTVIT IWHYHGGCHV GKVVDPNHKV LGTRRLRIVD GSTFSESPGT NPQGTVLMMG 480 RYMGVKILRR RLGKAAGV* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 3.0e-9 | 335 | 490 | 160 | + choline dehydrogenase; Validated | ||
PRK02106 | PRK02106 | 4.0e-18 | 122 | 237 | 120 | + choline dehydrogenase; Validated | ||
pfam05199 | GMC_oxred_C | 1.0e-24 | 335 | 480 | 151 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
COG2303 | BetA | 3.0e-32 | 126 | 491 | 378 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 59 | 498 | 440 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08391.1 | 0 | 62 | 498 | 6 | 441 | ABC transporter related; Choline dehydrogenase [Medicago truncatula] |
EMBL | CBI35951.1 | 0 | 59 | 498 | 155 | 593 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002327436.1 | 0 | 59 | 498 | 110 | 547 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002329018.1 | 0 | 59 | 498 | 153 | 591 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527404.1 | 0 | 59 | 498 | 159 | 597 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 63 | 491 | 127 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 0 | 63 | 491 | 127 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 0 | 63 | 491 | 127 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 63 | 491 | 127 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 63 | 491 | 127 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |