PlantCAZyme

Basic Information
Species	Gossypium raimondii
Cazyme ID	Gorai.011G064300.4
Family	AA3
Protein Properties	Length: 356 Molecular Weight: 39443.8 Isoelectric Point: 10.5804
Chromosome	Chromosome/Scaffold: 11 Start: 5445422 End: 5447842
Description	Glucose-methanol-choline (GMC) oxidoreductase family protein
View CDS

External Links
NCBI Taxonomy
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
AA3	2	348	2.8026e-45
LTVLVYATVQKVLFDKSAGKRPKAMGVMFKDENGNQHQAFLTNNRRSEVILSCGAIGTPQLLMLSGIGPKAELQRLNISMVLHNEFVGKGMADNPMNSVF VPMTRSVEQSLIQTVGITKMGVYIEASSGFGQSQDSIHCHHGLLSAEIGQLSTVPPKQRTRQAIEEFIKRKRDLPREAFKGGFILEKIAMPLSTGHLNLI NTNIDNNPSVTFNYFGHPRDLRRCVNGIRMAAKVIQSDRFTNFTKCDKPTVERLLNMSVKANINFIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVV DPNHKVLGTRRLRIVDGSTFSESPGTNPQGTVLMMGRYMGVKILRRR

Full Sequence
Protein Sequence Length: 356 Download
MLTVLVYATV QKVLFDKSAG KRPKAMGVMF KDENGNQHQA FLTNNRRSEV ILSCGAIGTP 60 QLLMLSGIGP KAELQRLNIS MVLHNEFVGK GMADNPMNSV FVPMTRSVEQ SLIQTVGITK 120 MGVYIEASSG FGQSQDSIHC HHGLLSAEIG QLSTVPPKQR TRQAIEEFIK RKRDLPREAF 180 KGGFILEKIA MPLSTGHLNL INTNIDNNPS VTFNYFGHPR DLRRCVNGIR MAAKVIQSDR 240 FTNFTKCDKP TVERLLNMSV KANINFIPKH TNDTKSLEQF CKDTVITIWH YHGGCHVGKV 300 VDPNHKVLGT RRLRIVDGST FSESPGTNPQ GTVLMMGRYM GVKILRRRLG KAAGV* 360

Full Sequence

Protein Sequence Length: 356 Download

MLTVLVYATV QKVLFDKSAG KRPKAMGVMF KDENGNQHQA FLTNNRRSEV ILSCGAIGTP    60
QLLMLSGIGP KAELQRLNIS MVLHNEFVGK GMADNPMNSV FVPMTRSVEQ SLIQTVGITK    120
MGVYIEASSG FGQSQDSIHC HHGLLSAEIG QLSTVPPKQR TRQAIEEFIK RKRDLPREAF    180
KGGFILEKIA MPLSTGHLNL INTNIDNNPS VTFNYFGHPR DLRRCVNGIR MAAKVIQSDR    240
FTNFTKCDKP TVERLLNMSV KANINFIPKH TNDTKSLEQF CKDTVITIWH YHGGCHVGKV    300
VDPNHKVLGT RRLRIVDGST FSESPGTNPQ GTVLMMGRYM GVKILRRRLG KAAGV*        360

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PRK02106	PRK02106	1.0e-9	192	347	160	+ choline dehydrogenase; Validated
PRK02106	PRK02106	1.0e-17	2	94	93	+ choline dehydrogenase; Validated
pfam05199	GMC_oxred_C	2.0e-25	192	337	151	+ GMC oxidoreductase. This domain found associated with pfam00732.
COG2303	BetA	1.0e-31	2	348	357	+ Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
PLN02785	PLN02785	0	2	355	354	+ Protein HOTHEAD

Gene Ontology
GO Term	Description
GO:0016614	oxidoreductase activity, acting on CH-OH group of donors
GO:0050660	flavin adenine dinucleotide binding
GO:0055114	oxidation-reduction process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	ABN08391.1	0	2	355	89	441	ABC transporter related; Choline dehydrogenase [Medicago truncatula]
RefSeq	XP_002275841.1	0	2	355	232	584	PREDICTED: hypothetical protein [Vitis vinifera]
RefSeq	XP_002327436.1	0	2	355	196	547	predicted protein [Populus trichocarpa]
RefSeq	XP_002329018.1	0	2	355	239	591	predicted protein [Populus trichocarpa]
RefSeq	XP_002527404.1	0	1	355	244	597	glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	3gdp_B	0	2	348	209	517	A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
PDB	3gdp_A	0	2	348	209	517	A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
PDB	3gdn_B	0	2	348	209	517	A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
PDB	3gdn_A	0	2	348	209	517	A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
PDB	1ju2_B	0	2	348	209	517	A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond

EST Download unfiltered results here

Hit	Length	Start	End	EValue
DT564680	316	10	325	0
DT567063	300	43	342	0
ES827719	354	1	354	0
DT547479	295	4	298	0
DT551429	280	58	337	0

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_020_00460.1	Aquca_013_00454.2	Aquca_013_00454.1	Aquca_013_00454.3	Aquca_013_00454.5
	Aquca_025_00060.1	Aquca_013_00454.4	Aquca_015_00360.2	Aquca_015_00360.1	Aquca_002_00625.1
	Aquca_002_00624.1	Aquca_013_00454.7	Aquca_013_00454.6
Arabidopsis lyrata	879508	907040	495263	895153	885302
	476435	918231	334713	920642
Arabidopsis thaliana	AT1G12570.1	AT3G56060.1	AT1G72970.1	AT5G51950.1	AT5G51950.2
	AT1G73050.1	AT1G72970.2	AT5G51930.1	AT1G14190.1	AT1G14185.1
Brachypodium distachyon	Bradi3g51670.1	Bradi4g28870.1	Bradi3g35310.2	Bradi4g28870.2	Bradi3g35310.1
	Bradi3g31630.1	Bradi5g18890.1	Bradi1g77300.1	Bradi1g31250.1
Brassica rapa	Bra016766	Bra022571	Bra008061	Bra003862	Bra029151
	Bra028286	Bra022570	Bra016021	Bra007212	Bra007213
	Bra029152	Bra026850	Bra008069
Carica papaya	evm.model.supercontig_4.214	evm.model.supercontig_131.52	evm.model.supercontig_128.38	evm.model.supercontig_128.39	evm.model.supercontig_375.4
Capsella rubella	Carubv10008714m	Carubv10019598m	Carubv10028412m	Carubv10016915m	Carubv10020028m
	Carubv10020023m	Carubv10027769m	Carubv10018458m	Carubv10020012m	Carubv10028260m
	Carubv10008703m
Chlamydomonas reinhardtii	Cre12.g514200.t1.2
Citrus clementina	Ciclev10019611m	Ciclev10019456m	Ciclev10019427m	Ciclev10019445m	Ciclev10006541m
	Ciclev10025184m	Ciclev10025302m	Ciclev10031199m	Ciclev10031316m
Citrus sinensis	orange1.1g009272m	orange1.1g009241m	orange1.1g008331m	orange1.1g008675m	orange1.1g008281m
	orange1.1g008163m	orange1.1g007210m	orange1.1g008715m	orange1.1g011442m	orange1.1g009873m
	orange1.1g012707m	orange1.1g015588m	orange1.1g045695m	orange1.1g016822m	orange1.1g023276m
Cucumis sativus	Cucsa.341190.1	Cucsa.360570.1	Cucsa.359700.1	Cucsa.089560.1	Cucsa.089580.1
	Cucsa.089600.1	Cucsa.089550.1	Cucsa.089500.1	Cucsa.089610.1	Cucsa.089510.1
	Cucsa.302690.1	Cucsa.089540.1	Cucsa.089570.2	Cucsa.068910.1	Cucsa.089570.1
	Cucsa.089590.1
Eucalyptus grandis	Eucgr.E00525.1	Eucgr.A02842.1	Eucgr.F03132.1	Eucgr.J03148.1	Eucgr.G02495.1
Fragaria vesca	mrna32372.1-v1.0-hybrid	mrna13343.1-v1.0-hybrid	mrna05701.1-v1.0-hybrid	mrna23054.1-v1.0-hybrid	mrna27390.1-v1.0-hybrid
Glycine max	Glyma17g14130.1	Glyma05g03580.1	Glyma20g29370.1	Glyma07g01220.2	Glyma08g20600.2
	Glyma11g02930.1	Glyma13g42630.1	Glyma15g02790.1	Glyma0615s00250.1	Glyma07g00530.1
	Glyma02g12060.2	Glyma01g05890.2	Glyma10g38480.2	Glyma0615s00200.2
Gossypium raimondii	Gorai.004G207200.2	Gorai.004G207200.1	Gorai.004G207200.4	Gorai.004G207200.3	Gorai.008G243300.1
	Gorai.007G009900.1	Gorai.009G142000.1	Gorai.011G064300.1	Gorai.011G199100.1	Gorai.011G064300.2
	Gorai.008G281500.1	Gorai.009G117900.1	Gorai.005G141700.1	Gorai.009G142000.2	Gorai.011G064300.3
	Gorai.009G142000.3	Gorai.009G142000.5	Gorai.009G142000.4	Gorai.004G207200.6	Gorai.004G207200.5
	Gorai.004G207200.7	Gorai.004G207200.8	Gorai.004G207200.10
Linum usitatissimum	Lus10015623	Lus10017827	Lus10003176	Lus10037640	Lus10024487
	Lus10002957	Lus10027406	Lus10031663	Lus10015012	Lus10038891
	Lus10030459	Lus10026607	Lus10032641	Lus10030457	Lus10030456
	Lus10030461	Lus10033390	Lus10030460	Lus10012816	Lus10034845
	Lus10026606	Lus10012817	Lus10030462	Lus10030458	Lus10012818
	Lus10030463	Lus10003833	Lus10024728	Lus10032347
Malus domestica	MDP0000451172	MDP0000185338	MDP0000158474	MDP0000425135	MDP0000318256
	MDP0000248951	MDP0000903805	MDP0000136847	MDP0000137211	MDP0000257243
	MDP0000561228	MDP0000130099	MDP0000232295	MDP0000177641	MDP0000465595
	MDP0000251783	MDP0000288439.474.954	MDP0000288439.474.954	MDP0000184832	MDP0000272655
	MDP0000288439.45.461	MDP0000288439.45.461	MDP0000727481	MDP0000748068	MDP0000210966
	MDP0000269370	MDP0000151331	MDP0000256300	MDP0000192359	MDP0000214280
	MDP0000124051
Manihot esculenta	cassava4.1_004445m	cassava4.1_004024m	cassava4.1_029597m	cassava4.1_003829m	cassava4.1_031834m
	cassava4.1_024092m
Medicago truncatula	Medtr5g011010.1	Medtr5g011020.1	Medtr2g100070.1	Medtr1g101770.1	Medtr4g005860.1
	Medtr5g041340.1	Medtr1g101760.1
Mimulus guttatus	mgv1a003421m	mgv1a003962m	mgv1a025723m	mgv1a003898m	mgv1a025036m
	mgv1a007376m
Oryza sativa	LOC_Os02g45530.1	LOC_Os09g19930.1	LOC_Os04g48400.1	LOC_Os08g31030.1	LOC_Os10g38050.1
	LOC_Os03g02700.1	LOC_Os06g44540.1
Panicum virgatum	Pavirv00022245m	Pavirv00037597m	Pavirv00009521m	Pavirv00060828m	Pavirv00034775m
	Pavirv00062067m	Pavirv00054028m	Pavirv00032583m	Pavirv00020766m	Pavirv00001081m
	Pavirv00019408m
Physcomitrella patens	Pp1s3_628V6.1	Pp1s78_69V6.1	Pp1s78_68V6.1	Pp1s472_10V6.1	Pp1s85_157V6.1
Phaseolus vulgaris	Phvul.003G213000.1	Phvul.010G139000.1	Phvul.005G159400.1	Phvul.007G066200.1	Phvul.010G162900.1
	Phvul.002G084200.1
Picea abies	MA_159144g0050	MA_46380g0010	MA_115358g0010	MA_41268g0010	MA_10307468g0010
	MA_10434495g0020	MA_10432967g0010	MA_3249g0010	MA_15634g0010	MA_68670g0010
	MA_137064g0010	MA_19258g0020	MA_762g0010	MA_10434427g0010	MA_111884g0010
	MA_577764g0010	MA_11792g0020	MA_10433135g0010	MA_269764g0010	MA_101730g0010
	MA_159149g0270	MA_159153g0080	MA_159155g0150	MA_147482g0030	MA_159142g0110
Populus trichocarpa	Potri.001G111500.8	Potri.001G111500.1	Potri.001G200800.1	Potri.001G111500.7	Potri.003G039000.1
	Potri.003G039000.2	Potri.008G009600.1	Potri.012G135200.1	Potri.008G087400.1	Potri.010G168200.2
	Potri.010G168200.1	Potri.001G111500.4	Potri.010G168100.2	Potri.010G168100.1	Potri.001G111500.6
	Potri.001G111500.2	Potri.001G111500.5	Potri.001G111500.3	Potri.010G249500.1
Prunus persica	ppa003422m	ppa016983m	ppa022070m	ppa015533m	ppa004308m
	ppa003595m	ppa017360m	ppa022916m	ppa003414m	ppa020579m
Ricinus communis	30147.m014326	30190.m011111	28694.m000670	29813.m001500	29748.m000381
Setaria italica	Si029318m	Si013472m	Si019398m	Si011855m	Si040002m
	Si038995m	Si008640m
Selaginella moellendorffii	100345	108291	407760	153538	410833
	90809	112603	80819	132959	410832
	232555	404769	429523	405960	52668
	81946	235799	427468	413925	402042
Sorghum bicolor	Sb04g031910.1	Sb06g025960.1	Sb07g019920.1	Sb02g023010.1	Sb01g031110.1
	Sb01g049320.1	Sb10g026110.1
Thellungiella halophila	Thhalv10007216m	Thhalv10018308m	Thhalv10013065m	Thhalv10018360m	Thhalv10015625m
	Thhalv10005870m	Thhalv10007408m	Thhalv10015735m	Thhalv10015262m
Vitis vinifera	GSVIVT01010650001	GSVIVT01019871001	GSVIVT01016856001	GSVIVT01010648001	GSVIVT01013124001
Volvox carteri	Vocar20013934m	Vocar20013933m

CAZyme Information