| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.011G082200.2 |
| Family | GH28 |
| Protein Properties | Length: 363 Molecular Weight: 38921.7 Isoelectric Point: 8.6627 |
| Chromosome | Chromosome/Scaffold: 11 Start: 8300956 End: 8303433 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 57 | 326 | 0 |
| TCNSPSRNPILVIPASKIFLLKPVTFSGPCKSTSIHVLMSGNIVAPDSKSAWKGYHLDMWLAFTNVNGLTIIGSGTINGRGAIWWSECSSYRVPQGGTCK GPTALTFYRCNGLVLKGTKHINSQRNHIAIFNCKDVTFSNLHISAPKTSPNTDGVDIASSSNVRILNSFIGTGDDCIAISSGSSHINITGIACGPGHGIS VGSLGAHGGNDTVEEVHVRNCTFNETMTGVRIKTWQGGVGYARKILFEKIKFIRADNPIIIDQYYCPGGH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 363 Download |
| MSLRTMELIF TVFITILYVL TPGASGATNL FNVMDYGAVG DGKTDDSAAF SKAWKATCNS 60 PSRNPILVIP ASKIFLLKPV TFSGPCKSTS IHVLMSGNIV APDSKSAWKG YHLDMWLAFT 120 NVNGLTIIGS GTINGRGAIW WSECSSYRVP QGGTCKGPTA LTFYRCNGLV LKGTKHINSQ 180 RNHIAIFNCK DVTFSNLHIS APKTSPNTDG VDIASSSNVR ILNSFIGTGD DCIAISSGSS 240 HINITGIACG PGHGISVGSL GAHGGNDTVE EVHVRNCTFN ETMTGVRIKT WQGGVGYARK 300 ILFEKIKFIR ADNPIIIDQY YCPGGHCKNE VGQLKSKSLT SICIFMVADN WFLNLLMVDI 360 GH* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-80 | 32 | 339 | 311 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 1.0e-82 | 1 | 331 | 342 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 7.0e-100 | 1 | 324 | 324 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 3.0e-100 | 30 | 322 | 294 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 1.0e-109 | 5 | 326 | 322 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD28723.1 | 0 | 28 | 340 | 13 | 326 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| EMBL | CBI36306.1 | 0 | 14 | 335 | 99 | 424 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002266797.1 | 0 | 25 | 335 | 12 | 303 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324855.1 | 0 | 6 | 340 | 2 | 331 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 30 | 329 | 27 | 317 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 5e-16 | 125 | 324 | 72 | 268 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-16 | 125 | 324 | 72 | 268 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-16 | 125 | 324 | 72 | 268 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 5e-16 | 125 | 324 | 72 | 268 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 5e-16 | 125 | 324 | 72 | 268 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
