CAZyme Information

Basic Information
SpeciesGossypium raimondii
Cazyme IDGorai.011G120000.1
FamilyGH18
Protein PropertiesLength: 271 Molecular Weight: 30202.9 Isoelectric Point: 4.5644
ChromosomeChromosome/Scaffold: 11 Start: 16533726 End: 16534538
Description
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH18282217.6e-21
  ILSFAIDADPSGNTQNGKFSPYWADTLTPESVAAMKKSHPNVKALTSLSGWSLGDKVLRWYTPDDTQQWISNAFSSLSSMAQQYHLDGIDIDYENFPRHN
  SSFAYCIGELITLLKNQSVISVATIAPYHKTIAPYIELFENYGDVIDFVNYQFYTDKVRKPKSYVEAFKIRAGQFDKEKLLPSYEVNGRGIQGD
Full Sequence
Protein Sequence     Length: 271     Download
MMEYIGATGV PVKLEAVPVE GGIDFHFILS FAIDADPSGN TQNGKFSPYW ADTLTPESVA    60
AMKKSHPNVK ALTSLSGWSL GDKVLRWYTP DDTQQWISNA FSSLSSMAQQ YHLDGIDIDY    120
ENFPRHNSSF AYCIGELITL LKNQSVISVA TIAPYHKTIA PYIELFENYG DVIDFVNYQF    180
YTDKVRKPKS YVEAFKIRAG QFDKEKLLPS YEVNGRGIQG DAFFDALSLL EENGFGVNGV    240
MIFSADASSS NDYYYERKSQ DFLLNSTVSV * 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd06546GH18_CTS3_chitinase4.0e-646209173+
smart00636Glyco_181.0e-1226182169+
cd00598GH18_chitinase-like1.0e-1326181162+
pfam00704Glyco_hydro_181.0e-1326181163+
cd06544GH18_narbonin3.0e-941243249+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCAN65355.101267143409hypothetical protein [Vitis vinifera]
RefSeqXP_002274616.10126767333PREDICTED: hypothetical protein [Vitis vinifera]
RefSeqXP_002281676.10326331296PREDICTED: hypothetical protein [Vitis vinifera]
RefSeqXP_002328469.1022671266predicted protein [Populus trichocarpa]
RefSeqXP_002517257.1012691269Chitinase 1 precursor, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3sim_B012653275A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus
PDB3sim_A012653275A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus
PDB1nar_A2e-2532487266A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution
PDB2gl6_H0.001932333162A Chain A, Crystal Structure Of Human Sarcomeric Mitochondrial Creatine Kinase
PDB2gl6_G0.001932333162A Chain A, Crystal Structure Of Human Sarcomeric Mitochondrial Creatine Kinase
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
DY83128624312430
JG18611919011860
GD05387121732140
CO16532327232630
EX33379327132630
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_046_00008.1Aquca_014_00353.1Aquca_010_00636.1Aquca_027_00184.1
Brachypodium distachyonBradi3g26850.1Bradi3g26810.1Bradi3g26840.1
Carica papayaevm.model.supercontig_139.6
Citrus clementinaCiclev10028881mCiclev10003729m
Citrus sinensisorange1.1g021511morange1.1g046094m
Eucalyptus grandisEucgr.B02439.1Eucgr.J02106.1
Fragaria vescamrna14033.1-v1.0-hybrid.59.211mrna14019.1-v1.0-hybridmrna15882.1-v1.0-hybridmrna14034.1-v1.0-hybridmrna17899.1-v1.0-hybrid
mrna22564.1-v1.0-hybrid
Glycine maxGlyma11g15512.1Glyma09g21615.1Glyma13g40590.1
Gossypium raimondiiGorai.003G135700.1Gorai.003G135800.1Gorai.003G134100.1Gorai.003G129600.1Gorai.003G138400.1
Linum usitatissimumLus10005172
Malus domesticaMDP0000904158MDP0000885802MDP0000644797MDP0000312089
Manihot esculentacassava4.1_024209mcassava4.1_027074m
Medicago truncatulaMedtr6g079630.1Medtr2g096030.1
Mimulus guttatusmgv1a019267mmgv1a024804m
Oryza sativaLOC_Os10g28050.1LOC_Os10g28080.1
Panicum virgatumPavirv00061810mPavirv00014582mPavirv00031712m
Phaseolus vulgarisPhvul.011G069900.1
Picea abiesMA_38396g0010MA_10427109g0010
Populus trichocarpaPotri.012G102400.1Potri.015G100500.1Potri.015G100600.1Potri.001G341700.1
Prunus persicappa023801mppa009038mppa009096m
Ricinus communis30039.m00023530039.m000234
Setaria italicaSi022612mSi026720mSi028172mSi036765mSi036774m
Selaginella moellendorffii41118115493
Sorghum bicolorSb01g021920.1
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny