y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G180900.1 |
Family | GH14 |
Protein Properties | Length: 584 Molecular Weight: 64022.7 Isoelectric Point: 6.6528 |
Chromosome | Chromosome/Scaffold: 11 Start: 42531073 End: 42534103 |
Description | beta-amylase 1 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 119 | 539 | 0 |
YVMMPLDSVTNGNTVNRKKAMNASLHALKSAGVEGIMIDVWWGLVEREAPGAYNWGGYAELLEMAKKHGLKVQAVMSFHQCGGNVGDSCTIPLPKWVTGE IEKDPDLAYTDQWGRRNYEYLSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQVGMGPAGELRYPSYPEANGTWKFPGIGAFQCYDKYML SSLKAAAEAAGKPEWGSTGPTDAGHYNNWPEDTPFFKKEGGGWNTPYGEFFLTWYSQMLLEHGARILSSATSIFDGAGVKISVKVAGIHWHYGTRSHAPE LTAGYYNTRFRDGYLPIAQMLARHGAVFNFTCIEMRDHEQPQDALCAPEKLVKQVALATGAAHVPLAGENALPRYDEYAHEQILRASSLNVDGSAVDREM CAFTYLRMNPSLFHPDNWRRF |
Full Sequence |
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Protein Sequence Length: 584 Download |
MALNLAHQIG SLAGTQIAAE VTTGEQSSSA TANVSGVRKV PLANLRCNAP GEALSPPILT 60 PPLTLRSAEN RPAMMSPSLS AACQAFGTLS PLETAEESSA SVAWKEGGKK EEKKGVPVYV 120 MMPLDSVTNG NTVNRKKAMN ASLHALKSAG VEGIMIDVWW GLVEREAPGA YNWGGYAELL 180 EMAKKHGLKV QAVMSFHQCG GNVGDSCTIP LPKWVTGEIE KDPDLAYTDQ WGRRNYEYLS 240 LGCDTLPVLK GRTPVQCYAD FMRAFRDNFK HLLGDTIVEI QVGMGPAGEL RYPSYPEANG 300 TWKFPGIGAF QCYDKYMLSS LKAAAEAAGK PEWGSTGPTD AGHYNNWPED TPFFKKEGGG 360 WNTPYGEFFL TWYSQMLLEH GARILSSATS IFDGAGVKIS VKVAGIHWHY GTRSHAPELT 420 AGYYNTRFRD GYLPIAQMLA RHGAVFNFTC IEMRDHEQPQ DALCAPEKLV KQVALATGAA 480 HVPLAGENAL PRYDEYAHEQ ILRASSLNVD GSAVDREMCA FTYLRMNPSL FHPDNWRRFV 540 AFVKKMNEGK GARRCWEEVE REAEQFVHVT QPFIQEAAVA LMH* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02161 | PLN02161 | 4.0e-141 | 116 | 547 | 442 | + beta-amylase | ||
pfam01373 | Glyco_hydro_14 | 5.0e-142 | 119 | 542 | 435 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
PLN00197 | PLN00197 | 0 | 1 | 583 | 585 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 0 | 116 | 554 | 439 | + beta-amylase | ||
PLN02801 | PLN02801 | 0 | 116 | 546 | 435 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY89374.1 | 0 | 1 | 583 | 1 | 576 | beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae] |
EMBL | CAN71375.1 | 0 | 3 | 583 | 1 | 570 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002285569.1 | 0 | 2 | 583 | 3 | 573 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314522.1 | 0 | 111 | 581 | 2 | 472 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518196.1 | 0 | 1 | 583 | 1 | 574 | Beta-amylase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1b1y_A | 0 | 116 | 547 | 6 | 436 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
PDB | 1ukp_D | 0 | 116 | 547 | 12 | 442 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
PDB | 1ukp_C | 0 | 116 | 547 | 12 | 442 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
PDB | 1ukp_B | 0 | 116 | 547 | 12 | 442 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
PDB | 1ukp_A | 0 | 116 | 547 | 12 | 442 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO779314 | 411 | 174 | 584 | 0 |
DT555349 | 320 | 203 | 522 | 0 |
HO798206 | 349 | 236 | 584 | 0 |
HO826564 | 406 | 172 | 577 | 0 |
DT559764 | 299 | 236 | 534 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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