| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.011G193300.1 |
| Family | GH28 |
| Protein Properties | Length: 456 Molecular Weight: 49013.4 Isoelectric Point: 5.8784 |
| Chromosome | Chromosome/Scaffold: 11 Start: 46788109 End: 46789975 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 106 | 429 | 0 |
| WHAACDYPGNSTFYVPEGTFLVGPISFRGPCYNDRSPNVEIRGTLFALSSLSSFKSSYWISFKNLQGLTLIGGPEYGKLDGQGAVEAWKEPSCEKSARCK KLITSIDFINVSHATISNITLSNSKGFHLGLHGSKNIKIYNVKIIAPEDSPNTDGIHVSNSSNISIFSSTIGVGDDCVSIGPGSKNVSVSNIRCGPGHGI SVGSLGKYKNEKDVVGINVRNCTINGTENGIRMKTWPGDRPSNAYNMTFEDIVMVNVSNPIIIDQEYCPSHKCKSNEPSMVKLKDIFIKNINGTYSTKSA VIFLCSSEAPCENVQLVNINLNYL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 456 Download |
| MMAFSLRNIV AFLALFHASI VVATLPSCQT CGSPEPSPPA PEPQAFPPEP EVPEPYPPEL 60 APYPEPDQSP EPSQAPIDDD GVFDVTNYGA VADGGTECSS AFSAAWHAAC DYPGNSTFYV 120 PEGTFLVGPI SFRGPCYNDR SPNVEIRGTL FALSSLSSFK SSYWISFKNL QGLTLIGGPE 180 YGKLDGQGAV EAWKEPSCEK SARCKKLITS IDFINVSHAT ISNITLSNSK GFHLGLHGSK 240 NIKIYNVKII APEDSPNTDG IHVSNSSNIS IFSSTIGVGD DCVSIGPGSK NVSVSNIRCG 300 PGHGISVGSL GKYKNEKDVV GINVRNCTIN GTENGIRMKT WPGDRPSNAY NMTFEDIVMV 360 NVSNPIIIDQ EYCPSHKCKS NEPSMVKLKD IFIKNINGTY STKSAVIFLC SSEAPCENVQ 420 LVNINLNYLV PNSPRQGRLN IKGFLNGLQV INSRF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-72 | 85 | 426 | 346 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 6.0e-73 | 82 | 428 | 351 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-74 | 82 | 426 | 351 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-84 | 110 | 428 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-115 | 83 | 428 | 349 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69218.1 | 0 | 68 | 455 | 476 | 863 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN69218.1 | 0 | 74 | 428 | 47 | 397 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22963.1 | 0 | 68 | 455 | 18 | 405 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002270999.1 | 0 | 6 | 455 | 1 | 444 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312795.1 | 0 | 82 | 426 | 42 | 380 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-19 | 176 | 426 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.00000000000004 | 84 | 426 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.000000000004 | 214 | 426 | 128 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000004 | 214 | 426 | 128 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000004 | 214 | 426 | 128 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
