| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.011G222200.1 |
| Family | GH28 |
| Protein Properties | Length: 397 Molecular Weight: 42695.7 Isoelectric Point: 8.4853 |
| Chromosome | Chromosome/Scaffold: 11 Start: 53104130 End: 53105896 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 53 | 385 | 0 |
| WNAACSTADSTFIYVPKGRYLVGSLAFKGQCKSPQIIIRIDGTIVAPSDYGVLGKWENWVSFERVSGVSIIGQGAFDAKGPSLWACKASSSNSCPLGTTT LRFTNSNNITINGLTSLNSQMFHIAINGCQNVQIQGVKIIAAGNSPNTDGIHVQLSTNVEIFNSSIKTGDDCISIGPGTKNLWIEQVTCGPGHGISIGSL AKDLEEEGVQNVTVKKTIFSGTQNGLRIKSWARPSSGFVQGVRFIDSVMRNVQNPIVIDQNYCPHSENCPGQVSGIKIKDIRYENIRGTSSTPIAIKFDC SPKNPCTEISLRNVNLTYLDKDAQSFCCNVVGK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 397 Download |
| MKLSGCNFHG VIVIVFVMLR ISSTSAMTNF NVLNFGANPI GRTDSTDSFL KAWNAACSTA 60 DSTFIYVPKG RYLVGSLAFK GQCKSPQIII RIDGTIVAPS DYGVLGKWEN WVSFERVSGV 120 SIIGQGAFDA KGPSLWACKA SSSNSCPLGT TTLRFTNSNN ITINGLTSLN SQMFHIAING 180 CQNVQIQGVK IIAAGNSPNT DGIHVQLSTN VEIFNSSIKT GDDCISIGPG TKNLWIEQVT 240 CGPGHGISIG SLAKDLEEEG VQNVTVKKTI FSGTQNGLRI KSWARPSSGF VQGVRFIDSV 300 MRNVQNPIVI DQNYCPHSEN CPGQVSGIKI KDIRYENIRG TSSTPIAIKF DCSPKNPCTE 360 ISLRNVNLTY LDKDAQSFCC NVVGKVFDLV RPNSCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-83 | 22 | 381 | 368 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-88 | 30 | 396 | 376 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-90 | 57 | 382 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-102 | 11 | 395 | 398 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 5.0e-136 | 23 | 396 | 375 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23356.1 | 0 | 30 | 396 | 22 | 390 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002262690.1 | 0 | 23 | 396 | 25 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002315106.1 | 0 | 1 | 396 | 1 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524365.1 | 0 | 11 | 396 | 4 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529089.1 | 0 | 11 | 396 | 10 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-23 | 98 | 369 | 85 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.00000000000009 | 18 | 380 | 9 | 350 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.0000000000009 | 127 | 314 | 79 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000000009 | 127 | 314 | 79 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000000000009 | 127 | 314 | 79 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
