y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G222300.1 |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 42333.3 Isoelectric Point: 8.64 |
Chromosome | Chromosome/Scaffold: 11 Start: 53112619 End: 53114277 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 385 | 0 |
NAACGTADSTFIYVPKGRYLVGPLAFKGQCKSSQIIIRIDGTIVAPLDYGVLGKSNNWFSFEDVSGVSIIGRGTFDAKGPSLWACKASNSNSCPSGATTL SFTNSNNIRINGLTSLNSQMFHIVINGCQNVHLKGVKIIAAGNSPNTDGIHVQLSRNVEILSTSIKTGDDCISIGPGTENLWIEQITCGPGHGISIGSLA KDLKEEGVQNVTVKKTVFSNTQNGLRIKSWARPSNGYVQGVRFIDSVMRNVQNPIMIDQNYCPRNENCPGQVSGIKINDIVYENIRGTSSTPIAIKFDCS DKNPCTGIKLQNVNLTYLNKAAQSFCSNVVGK |
Full Sequence |
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Protein Sequence Length: 397 Download |
MKLSGCNLPG IIVMVFVMLS SSSISAITNF NVLNFGANPT GGTDSTDSFL KAWNAACGTA 60 DSTFIYVPKG RYLVGPLAFK GQCKSSQIII RIDGTIVAPL DYGVLGKSNN WFSFEDVSGV 120 SIIGRGTFDA KGPSLWACKA SNSNSCPSGA TTLSFTNSNN IRINGLTSLN SQMFHIVING 180 CQNVHLKGVK IIAAGNSPNT DGIHVQLSRN VEILSTSIKT GDDCISIGPG TENLWIEQIT 240 CGPGHGISIG SLAKDLKEEG VQNVTVKKTV FSNTQNGLRI KSWARPSNGY VQGVRFIDSV 300 MRNVQNPIMI DQNYCPRNEN CPGQVSGIKI NDIVYENIRG TSSTPIAIKF DCSDKNPCTG 360 IKLQNVNLTY LNKAAQSFCS NVVGKAIDLV RPNSCL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-82 | 29 | 388 | 365 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-88 | 57 | 387 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-93 | 30 | 396 | 373 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 8.0e-101 | 25 | 395 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-139 | 14 | 396 | 387 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23356.1 | 0 | 30 | 396 | 22 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262690.1 | 0 | 23 | 396 | 25 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 11 | 396 | 12 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 1 | 396 | 1 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 8 | 396 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-19 | 153 | 369 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.00000000000009 | 18 | 368 | 9 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.0000000000001 | 127 | 382 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000001 | 127 | 382 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000000001 | 127 | 382 | 79 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |