y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G222400.1 |
Family | GH28 |
Protein Properties | Length: 372 Molecular Weight: 40024.8 Isoelectric Point: 8.4881 |
Chromosome | Chromosome/Scaffold: 11 Start: 53120607 End: 53122376 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 58 | 360 | 0 |
GQCKSPQIIIRIDGTIVAPLDYGVLGKSDNWFSFEGVSGVSIIGRGIFDAKGPSLWACKAPNSNSCPSGARMFCKSNNIRINGLTSLNSQMFHIVINGCQ NVHLRGVKIVAAGNSPNTDGIHVQLSRNVEILSTFIKTGDDCISIGPGTENLWIEQVTCGPGHGISIGSLAKDLKEEGVQNVTVKNTIFSNTQNGLRIKS WARPSSGYVQGVRFIGSVMTNIQNPIVIDQNYCPRNENCPGQVSGIKIKDIVYEDIRGTSSTPIAIEFDCSSKNPCTGIRLQNVNLTYLNKTTQSFCSNV VGK |
Full Sequence |
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Protein Sequence Length: 372 Download |
MKLSGFNSLG FVLIVFVMLS ACSTFAMTEF NVLNFGANLN GRTDSTNSFL KAWNAACGQC 60 KSPQIIIRID GTIVAPLDYG VLGKSDNWFS FEGVSGVSII GRGIFDAKGP SLWACKAPNS 120 NSCPSGARMF CKSNNIRING LTSLNSQMFH IVINGCQNVH LRGVKIVAAG NSPNTDGIHV 180 QLSRNVEILS TFIKTGDDCI SIGPGTENLW IEQVTCGPGH GISIGSLAKD LKEEGVQNVT 240 VKNTIFSNTQ NGLRIKSWAR PSSGYVQGVR FIGSVMTNIQ NPIVIDQNYC PRNENCPGQV 300 SGIKIKDIVY EDIRGTSSTP IAIEFDCSSK NPCTGIRLQN VNLTYLNKTT QSFCSNVVGK 360 VFDLVRPNSC L* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-68 | 30 | 363 | 362 | + polygalacturonase | ||
PLN02793 | PLN02793 | 8.0e-77 | 30 | 371 | 373 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-80 | 58 | 357 | 303 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-83 | 30 | 370 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 4.0e-116 | 8 | 371 | 391 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23356.1 | 0 | 30 | 371 | 22 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262690.1 | 0 | 23 | 371 | 25 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 7 | 371 | 8 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 26 | 371 | 28 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 11 | 371 | 4 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-20 | 132 | 344 | 158 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-16 | 91 | 357 | 72 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-16 | 91 | 357 | 72 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-16 | 91 | 357 | 72 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-16 | 91 | 357 | 72 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |