| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.012G035300.1 |
| Family | GH28 |
| Protein Properties | Length: 483 Molecular Weight: 52746.3 Isoelectric Point: 7.8884 |
| Chromosome | Chromosome/Scaffold: 12 Start: 4352501 End: 4356669 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 112 | 454 | 0 |
| SEKGGAQLNVPQGKWLTGSFNLTSNFTLFLEQGAVILGSQDPEEWPIVEPLPSYGRGRERLGGRHISLIHGDGLTNVVITGNNGTIDGQGRIWWELWWNR TLNHTRGHLVELMNSRNILISNLTFRNSPFWTIHPVYCSNVVVKGMTILAPLSAPNTDGIDPDSSTNVCIEDCYIESGDDLVAIKSGWDQYGIKMARPSS NIKVRRISGTTPTCSGVGIGSEMSGGIFNVTIENMHVWNSAAGVRIKTDKGRGGYIANITIRNIMMERVKIPIRLSRGSNDHPDDRWDPKAIPKIRGIFI SNIVSLNSTKAPVLAGIRGASFEGLCFKNVTLLGLSPNAAWHC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 483 Download |
| MESEKSNYGA IMVYFTKPSW AFLVLLFTVI AILSLQISPK AIILPFPLFP VPGSSELDFE 60 SDFDPGSCVA TFGEFPERKH VMSLKDFGGV GDGKTSNTAA FRKALDYMQR FSEKGGAQLN 120 VPQGKWLTGS FNLTSNFTLF LEQGAVILGS QDPEEWPIVE PLPSYGRGRE RLGGRHISLI 180 HGDGLTNVVI TGNNGTIDGQ GRIWWELWWN RTLNHTRGHL VELMNSRNIL ISNLTFRNSP 240 FWTIHPVYCS NVVVKGMTIL APLSAPNTDG IDPDSSTNVC IEDCYIESGD DLVAIKSGWD 300 QYGIKMARPS SNIKVRRISG TTPTCSGVGI GSEMSGGIFN VTIENMHVWN SAAGVRIKTD 360 KGRGGYIANI TIRNIMMERV KIPIRLSRGS NDHPDDRWDP KAIPKIRGIF ISNIVSLNST 420 KAPVLAGIRG ASFEGLCFKN VTLLGLSPNA AWHCEFVSGC TNAVFPLPCP HLQNNGSSTC 480 CS* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-26 | 76 | 384 | 324 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-28 | 82 | 384 | 323 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 4.0e-29 | 80 | 397 | 331 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-33 | 180 | 469 | 304 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 4.0e-62 | 64 | 403 | 364 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN76963.1 | 0 | 46 | 478 | 32 | 462 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI37530.1 | 0 | 1 | 481 | 1 | 476 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274138.1 | 0 | 1 | 481 | 1 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310517.1 | 0 | 67 | 482 | 20 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526639.1 | 0 | 64 | 482 | 57 | 478 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 9.94922e-44 | 74 | 445 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 9.94922e-44 | 74 | 445 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 9.94922e-44 | 74 | 445 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 9.94922e-44 | 74 | 445 | 22 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-22 | 126 | 384 | 52 | 308 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
