y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.012G041000.1 |
Family | CBM43 |
Protein Properties | Length: 237 Molecular Weight: 24617.7 Isoelectric Point: 8.3878 |
Chromosome | Chromosome/Scaffold: 12 Start: 5108836 End: 5112517 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 93 | 175 | 2.3e-34 |
WCVASQSASERAVQVALDYACGHGGADCAAIQPGGMCYNPNTVHAHASYAFNSYFRKNPVPSSCNFGGTAVTTNIDPSSGTCQ |
Full Sequence |
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Protein Sequence Length: 237 Download |
MVSTTISTKI FLLFCLLFSP GRGVSKKVDI SSEQKDITTP ITTMPTIIPT TTPTSSSPVL 60 NPTSNPDTAS PMIMTPMTMA PATTTSGGLG GSWCVASQSA SERAVQVALD YACGHGGADC 120 AAIQPGGMCY NPNTVHAHAS YAFNSYFRKN PVPSSCNFGG TAVTTNIDPS SGTCQYQSTS 180 TTSSILNTTN SNGSNVFGAV PYNPSPPSAA AVRLRPPGQP FFTTLTCLGI YYQRSR* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 5.0e-20 | 92 | 163 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-32 | 92 | 169 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC79758.1 | 2.99878e-43 | 22 | 207 | 41 | 220 | hypothetical protein OsI_21142 [Oryza sativa Indica Group] |
GenBank | EEE64827.1 | 5.00264e-43 | 22 | 207 | 41 | 220 | hypothetical protein OsJ_19684 [Oryza sativa Japonica Group] |
RefSeq | NP_001031450.1 | 0 | 35 | 211 | 22 | 200 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002283721.1 | 0 | 93 | 198 | 99 | 204 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002441577.1 | 5.60519e-45 | 6 | 208 | 9 | 189 | hypothetical protein SORBIDRAFT_09g029700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 5e-17 | 91 | 180 | 11 | 100 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |