| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.012G095700.1 |
| Family | GH33 |
| Protein Properties | Length: 337 Molecular Weight: 37543 Isoelectric Point: 9.1891 |
| Chromosome | Chromosome/Scaffold: 12 Start: 17628888 End: 17631244 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH33 | 37 | 325 | 2.1e-28 |
| SAPFNSCRASTIVEVSKGPFLVAYYGGTSEGAPDVKIWLQTMGGRWYTPIVMDEEPNVPMWNPVLFKLPSDELLLFYKVGLDVQKWSGCMKRSYDKGVTW TQREQLPPGILGPSKNKPLLLRNGNLLFGSSVESWNSWGAWAEVTPDSGRTWKKYGPIYVKSQVLSVIQPVPYLTAKGHLRLLMRSFNNISRVCMAESFD GGQGWGYAIPTELPNPNSGIDGVKLRDGRLLLAYNTISRGVLKVSLSKDDGDSWQDSLTLEETQGMEFSYPAVIQASDGLVHITYTYNR | |||
| Full Sequence |
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| Protein Sequence Length: 337 Download |
| MCRYTKGTTS SPESLHKKRH LPIKGPLKEE FTFPACSAPF NSCRASTIVE VSKGPFLVAY 60 YGGTSEGAPD VKIWLQTMGG RWYTPIVMDE EPNVPMWNPV LFKLPSDELL LFYKVGLDVQ 120 KWSGCMKRSY DKGVTWTQRE QLPPGILGPS KNKPLLLRNG NLLFGSSVES WNSWGAWAEV 180 TPDSGRTWKK YGPIYVKSQV LSVIQPVPYL TAKGHLRLLM RSFNNISRVC MAESFDGGQG 240 WGYAIPTELP NPNSGIDGVK LRDGRLLLAY NTISRGVLKV SLSKDDGDSW QDSLTLEETQ 300 GMEFSYPAVI QASDGLVHIT YTYNRTQIKH VVVQPN* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00260 | Sialidase | 0.0002 | 79 | 292 | 251 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| COG4692 | COG4692 | 2.0e-24 | 39 | 335 | 350 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 4.0e-89 | 54 | 319 | 282 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18568.1 | 0 | 10 | 336 | 27 | 354 | unknown [Glycine max] |
| RefSeq | NP_851204.1 | 0 | 27 | 334 | 14 | 322 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263578.1 | 0 | 23 | 336 | 55 | 369 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324495.1 | 0 | 27 | 336 | 11 | 321 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002531744.1 | 0 | 18 | 336 | 2 | 321 | conserved hypothetical protein [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EL689016 | 287 | 35 | 320 | 0 |
| DV137355 | 268 | 56 | 322 | 0 |
| CV274814 | 246 | 90 | 335 | 0 |
| DV145816 | 255 | 53 | 306 | 0 |
| EY114510 | 258 | 26 | 282 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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