| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.012G120000.1 |
| Family | GH28 |
| Protein Properties | Length: 392 Molecular Weight: 41602.5 Isoelectric Point: 8.9462 |
| Chromosome | Chromosome/Scaffold: 12 Start: 27474125 End: 27476445 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 51 | 380 | 0 |
| TRACASTNPATIYVPKGRFLLRSVNFRGKCNNNAISFRIDGTLVAPVDYRIIGKADNWISFQYVDGVSIYGGKLDAKGTGLWACKNSGKACPSGATTLSF SNSKNVVVDRLTSLNSQMFHIVINGCHNVKMQGVTVIASGNSPNTDGIHVQLSSGVTILNSNIQTGDDCISIGPGATNLWIEKITCGPGHGISIGSLGKD QNEAGVQNVTVKTAKFMGTQNGVRIKSWARPSSGFARNIVFQHIVMKNVENPIVIDQNYCPGNNNCPDQVSGVKVSNVRYQDIHGTSATQVAVKFDCSAK HPCSGIRLEEVKLTYKNEVAEASCKHAAGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 392 Download |
| MATLPPLFLP LILFLSFNSS LAALLNLNVL SFGAKPDGTT DSTNAFLSAW TRACASTNPA 60 TIYVPKGRFL LRSVNFRGKC NNNAISFRID GTLVAPVDYR IIGKADNWIS FQYVDGVSIY 120 GGKLDAKGTG LWACKNSGKA CPSGATTLSF SNSKNVVVDR LTSLNSQMFH IVINGCHNVK 180 MQGVTVIASG NSPNTDGIHV QLSSGVTILN SNIQTGDDCI SIGPGATNLW IEKITCGPGH 240 GISIGSLGKD QNEAGVQNVT VKTAKFMGTQ NGVRIKSWAR PSSGFARNIV FQHIVMKNVE 300 NPIVIDQNYC PGNNNCPDQV SGVKVSNVRY QDIHGTSATQ VAVKFDCSAK HPCSGIRLEE 360 VKLTYKNEVA EASCKHAAGT ISGVVQPTSC L* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-91 | 54 | 382 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 4.0e-96 | 32 | 391 | 368 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-97 | 32 | 387 | 366 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 5.0e-106 | 31 | 390 | 366 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 2.0e-144 | 31 | 391 | 362 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC64184.1 | 0 | 1 | 391 | 1 | 393 | endopolygalacturonase [Prunus persica] |
| GenBank | ABD33834.1 | 0 | 1 | 391 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
| DDBJ | BAF42034.1 | 0 | 7 | 391 | 14 | 398 | polygalacturonase3 [Pyrus communis] |
| EMBL | CAH18935.1 | 0 | 7 | 391 | 14 | 398 | polygalacturonase [Pyrus communis] |
| RefSeq | XP_002529090.1 | 0 | 8 | 391 | 11 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-22 | 62 | 364 | 57 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 8e-17 | 15 | 380 | 9 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.000000000000002 | 121 | 364 | 77 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000000000002 | 121 | 364 | 77 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000000000002 | 121 | 364 | 77 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
