y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.012G167000.1 |
Family | AA7 |
Protein Properties | Length: 538 Molecular Weight: 60151 Isoelectric Point: 8.9507 |
Chromosome | Chromosome/Scaffold: 12 Start: 33723961 End: 33726190 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 76 | 531 | 0 |
FSTPTTPKPYAIITPLKTSHVQSTIYCSKNHGFQLRIRSGGHDVEGVSYVSQVPFVILDLVNFRDVKVDTKNEVAWVQSGATTGELYYGIASKTQTLGFP AGICHTIGIGGHLSGGGFGILGRKYGLAADHIIDAKMIDANGRVFHRKSMGEDLFWAIRGGGGNTFGVVVAWKIKLVAVPPVVTVFTVNKNLEQNATKIF HRWQNIAHKLPKDLFTSVWVMKVNSSQVGKKTVQASFKGMFLGRIDVLIPLIQYSFPELGLARENCTEMSWVQSVLYYGALPIEPVEILLNRSALPRLSL KAKTDYIREPMSETGIEGFMNMFLEEGTDFAITMIEAFGGKMDEIRESEIPFPHRSGILFESVYIVQWANEEDAGLCINWMRRLYSYMSSYASKSLRGAY YNYKDLDLGTNNINGYTSYEQASVWGLKYFRNNFKRLVRIKTMIDPMNFFSNEQSI |
Full Sequence |
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Protein Sequence Length: 538 Download |
MALVSSEHEI PSTFCASISY CDIVIEWGNF SSSLWRFPSL PFSRISNSST ISKVIYTQNN 60 PSYSSVLNAS IHNSRFSTPT TPKPYAIITP LKTSHVQSTI YCSKNHGFQL RIRSGGHDVE 120 GVSYVSQVPF VILDLVNFRD VKVDTKNEVA WVQSGATTGE LYYGIASKTQ TLGFPAGICH 180 TIGIGGHLSG GGFGILGRKY GLAADHIIDA KMIDANGRVF HRKSMGEDLF WAIRGGGGNT 240 FGVVVAWKIK LVAVPPVVTV FTVNKNLEQN ATKIFHRWQN IAHKLPKDLF TSVWVMKVNS 300 SQVGKKTVQA SFKGMFLGRI DVLIPLIQYS FPELGLAREN CTEMSWVQSV LYYGALPIEP 360 VEILLNRSAL PRLSLKAKTD YIREPMSETG IEGFMNMFLE EGTDFAITMI EAFGGKMDEI 420 RESEIPFPHR SGILFESVYI VQWANEEDAG LCINWMRRLY SYMSSYASKS LRGAYYNYKD 480 LDLGTNNING YTSYEQASVW GLKYFRNNFK RLVRIKTMID PMNFFSNEQS IPPLLSP* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 3.0e-14 | 84 | 534 | 464 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 6.0e-15 | 474 | 532 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 5.0e-18 | 84 | 221 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002330608.1 | 0 | 47 | 536 | 43 | 535 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330610.1 | 0 | 47 | 536 | 41 | 532 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332196.1 | 0 | 47 | 536 | 32 | 526 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333020.1 | 0 | 47 | 536 | 41 | 532 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333339.1 | 0 | 47 | 536 | 41 | 532 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 42 | 534 | 11 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 53 | 535 | 24 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 53 | 535 | 24 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 53 | 535 | 22 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 53 | 535 | 22 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES830586 | 328 | 198 | 519 | 0 |
HO777438 | 514 | 29 | 534 | 0 |
ES817817 | 274 | 170 | 443 | 0 |
ES817817 | 57 | 445 | 501 | 9e-23 |
ES830586 | 48 | 479 | 524 | 4.8 |
Sequence Alignments (This image is cropped. Click for full image.) |
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