| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.012G172100.1 |
| Family | GH28 |
| Protein Properties | Length: 529 Molecular Weight: 57795.4 Isoelectric Point: 9.5314 |
| Chromosome | Chromosome/Scaffold: 12 Start: 34177685 End: 34184214 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 137 | 482 | 0 |
| AAACKVEASTVVVPAKFIFLVGPISFSGPYCQANTVFQLDGTIIAPTDSKPWGKGILQWLEFTKLKGITVQGKGIIDGRGSGWWLEAPYEDPYDDERKLI IPLKNTVQERPPMPVRNELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDMSVSSPGDSPNTDGIHLQNSKDVLIHGTTLACGD DCVSIQTGCSNVYIHNVNCGPGHGISIGSLGKDNTKACVSNITVRDIMMHNTMNGVRIKTWQGGSGNVQGVLFSNIQVSEVQLPIVIDQFYCDKRTCKNQ TAAVALSGITYEKIRGTYTVKPVHLACSDSLPCIGVTLSAIQLKPM | |||
| Full Sequence |
|---|
| Protein Sequence Length: 529 Download |
| MKGVGLRRHT FMFLVAFLVW SSSIETCIAR KSKHWRQRRH AASVSLYKKK TKDHSHGHHN 60 YHNGGTKTKP PPYKTTPPSP KVKAPPSPKP KVKVPSIPPP QKGYGNGQQS KVFDVLHFGA 120 KGDGKADDTK AFQAAWAAAC KVEASTVVVP AKFIFLVGPI SFSGPYCQAN TVFQLDGTII 180 APTDSKPWGK GILQWLEFTK LKGITVQGKG IIDGRGSGWW LEAPYEDPYD DERKLIIPLK 240 NTVQERPPMP VRNELSGKMP SIKPTALRFY GSFNVTVTGI TIQNSPQCHL KFDNCIGVVV 300 HDMSVSSPGD SPNTDGIHLQ NSKDVLIHGT TLACGDDCVS IQTGCSNVYI HNVNCGPGHG 360 ISIGSLGKDN TKACVSNITV RDIMMHNTMN GVRIKTWQGG SGNVQGVLFS NIQVSEVQLP 420 IVIDQFYCDK RTCKNQTAAV ALSGITYEKI RGTYTVKPVH LACSDSLPCI GVTLSAIQLK 480 PMQERYHLYD PFCWQSYGEL TTPTVPPIAC LQIGKPPNNR VQSNYDVC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 7.0e-72 | 103 | 479 | 383 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 4.0e-72 | 107 | 480 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 3.0e-77 | 115 | 480 | 370 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-86 | 144 | 479 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 8.0e-99 | 111 | 511 | 405 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK95830.1 | 0 | 1 | 528 | 4 | 516 | unknown [Populus trichocarpa] |
| RefSeq | NP_564758.2 | 0 | 2 | 528 | 5 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266600.1 | 0 | 1 | 528 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311773.1 | 0 | 1 | 528 | 4 | 517 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525361.1 | 0 | 1 | 528 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-22 | 258 | 431 | 145 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 5e-20 | 263 | 480 | 99 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-20 | 263 | 480 | 99 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-20 | 263 | 480 | 99 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 5e-20 | 263 | 480 | 99 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
