| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.012G172100.2 |
| Family | GH28 |
| Protein Properties | Length: 426 Molecular Weight: 46478.3 Isoelectric Point: 10.1652 |
| Chromosome | Chromosome/Scaffold: 12 Start: 34180050 End: 34184214 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 137 | 397 | 0 |
| AAACKVEASTVVVPAKFIFLVGPISFSGPYCQANTVFQLDGTIIAPTDSKPWGKGILQWLEFTKLKGITVQGKGIIDGRGSGWWLEAPYEDPYDDERKLI IPLKNTVQERPPMPVRNELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDMSVSSPGDSPNTDGIHLQNSKDVLIHGTTLACGD DCVSIQTGCSNVYIHNVNCGPGHGISIGSLGKDNTKACVSNITVRDIMMHNTMNGVRIKTW | |||
| Full Sequence |
|---|
| Protein Sequence Length: 426 Download |
| MKGVGLRRHT FMFLVAFLVW SSSIETCIAR KSKHWRQRRH AASVSLYKKK TKDHSHGHHN 60 YHNGGTKTKP PPYKTTPPSP KVKAPPSPKP KVKVPSIPPP QKGYGNGQQS KVFDVLHFGA 120 KGDGKADDTK AFQAAWAAAC KVEASTVVVP AKFIFLVGPI SFSGPYCQAN TVFQLDGTII 180 APTDSKPWGK GILQWLEFTK LKGITVQGKG IIDGRGSGWW LEAPYEDPYD DERKLIIPLK 240 NTVQERPPMP VRNELSGKMP SIKPTALRFY GSFNVTVTGI TIQNSPQCHL KFDNCIGVVV 300 HDMSVSSPGD SPNTDGIHLQ NSKDVLIHGT TLACGDDCVS IQTGCSNVYI HNVNCGPGHG 360 ISIGSLGKDN TKACVSNITV RDIMMHNTMN GVRIKTWQVS LQSSLPHHKR TSSLEESNHK 420 HGLGK* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 7.0e-52 | 110 | 398 | 291 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 1.0e-55 | 107 | 408 | 303 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 7.0e-56 | 103 | 398 | 300 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-59 | 144 | 398 | 255 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-62 | 111 | 398 | 290 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK95830.1 | 0 | 1 | 398 | 4 | 386 | unknown [Populus trichocarpa] |
| RefSeq | NP_564758.2 | 0 | 2 | 398 | 5 | 409 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266600.1 | 0 | 1 | 415 | 1 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311773.1 | 0 | 1 | 398 | 4 | 387 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525361.1 | 0 | 1 | 398 | 1 | 389 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4e-18 | 114 | 396 | 29 | 330 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-18 | 114 | 396 | 29 | 330 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-18 | 114 | 396 | 29 | 330 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-18 | 114 | 396 | 29 | 330 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000003 | 258 | 396 | 145 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
