Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.012G187800.1 |
Family | PL1 |
Protein Properties | Length: 441 Molecular Weight: 49642.6 Isoelectric Point: 9.3927 |
Chromosome | Chromosome/Scaffold: 12 Start: 35420540 End: 35422485 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 158 | 357 | 0 |
LWIIFARAMIITLKEELIMSGDKTIDARGANVHVAYGAGITIQYVRNVIIHGLHIHHIVPGNGGMIRDSVNHYGFRTKSDGDGISLFGATNVWLDHLSMY KCRDGLIDAIQGSTAITISNCHFTHHDQVMLFGANDNHKMDEKMQITLAFNHFGKGLVQRMPRCRWGFIHVVNNDYTHWLMYAIGGSSHPTVISQGNRYI |
Full Sequence |
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Protein Sequence Length: 441 Download |
MDAAGNRSCK LLLFFFAAII PALQGHIGEY DEYWKQRELE AKENTEQAYN PNPEEVTQHV 60 NHLVSRSLMR LNSTRRHLRA RKKGGPCDPT SPIDQCWRCD RNWEKNRQRL ADCAIGFARG 120 TIGGKYGRIY VVTDPSDDDL LNPKPGTLRH AVIQKEPLWI IFARAMIITL KEELIMSGDK 180 TIDARGANVH VAYGAGITIQ YVRNVIIHGL HIHHIVPGNG GMIRDSVNHY GFRTKSDGDG 240 ISLFGATNVW LDHLSMYKCR DGLIDAIQGS TAITISNCHF THHDQVMLFG ANDNHKMDEK 300 MQITLAFNHF GKGLVQRMPR CRWGFIHVVN NDYTHWLMYA IGGSSHPTVI SQGNRYIARR 360 HVASKEVTKR DYAPPEVWKT WNWRSEGDLM VNGAFFSQSG DPKASSKFKG DTKVSAKPAY 420 KVDLLTKDSG TLICIRGRAC * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 6.0e-16 | 26 | 78 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 2.0e-24 | 120 | 354 | 247 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-59 | 171 | 356 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-67 | 166 | 358 | 204 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 18 | 440 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 18 | 440 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 17 | 440 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 12 | 440 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 6 | 440 | 5 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 91 | 432 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 91 | 432 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-19 | 110 | 347 | 2 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000005 | 194 | 356 | 147 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000007 | 239 | 333 | 205 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |