Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.013G003900.1 |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42584.2 Isoelectric Point: 9.6975 |
Chromosome | Chromosome/Scaffold: 13 Start: 278334 End: 279880 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 383 | 0 |
WEAACSSADSTMIYVPKGRYLLGSMAFKGGCKSPQITIRIDGTLVAPQDYRVLGKSTDWLNFEGVNGVSILGGALDAKGPSLWACKASHSNCPSGATTLS FTNSKNIRIRRLLSLNSQMFHIVINGCENVHVQGVSIIAAGDSPNTDGIHVQLSKNVNIIKCSIKTGDDCISIGPGTKNLWVEQVTCGPGHGISIGSLAK DLKEEGVQNVTIRKTTFMETQNGLRIKSWARPSTGFVQGVRFLDSLMRNVQNPIVIDQNYCPHNLNCPNQVSGIKIKDIIYEGIRGTSSTQVAIKFDCSP KNPCTGIRLQNVNLSYLNKPAQSSCSNVRGK |
Full Sequence |
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Protein Sequence Length: 395 Download |
MMKLTRPFHG IILILFVMLA INSTSATTKY NVLSFGAKPN GKTDSTKAFL MAWEAACSSA 60 DSTMIYVPKG RYLLGSMAFK GGCKSPQITI RIDGTLVAPQ DYRVLGKSTD WLNFEGVNGV 120 SILGGALDAK GPSLWACKAS HSNCPSGATT LSFTNSKNIR IRRLLSLNSQ MFHIVINGCE 180 NVHVQGVSII AAGDSPNTDG IHVQLSKNVN IIKCSIKTGD DCISIGPGTK NLWVEQVTCG 240 PGHGISIGSL AKDLKEEGVQ NVTIRKTTFM ETQNGLRIKS WARPSTGFVQ GVRFLDSLMR 300 NVQNPIVIDQ NYCPHNLNCP NQVSGIKIKD IIYEGIRGTS STQVAIKFDC SPKNPCTGIR 360 LQNVNLSYLN KPAQSSCSNV RGKALNLVRP ESCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-87 | 57 | 380 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-91 | 23 | 391 | 379 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-92 | 32 | 394 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 9.0e-104 | 20 | 393 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 9.0e-146 | 14 | 394 | 385 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23356.1 | 0 | 30 | 394 | 22 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262690.1 | 0 | 23 | 394 | 25 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 1 | 394 | 1 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 11 | 394 | 4 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 2 | 394 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-20 | 151 | 334 | 154 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 5e-17 | 26 | 366 | 17 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.000000000000002 | 54 | 312 | 15 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000002 | 54 | 312 | 15 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000002 | 54 | 312 | 15 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |