| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.013G004000.1 |
| Family | GH28 |
| Protein Properties | Length: 336 Molecular Weight: 35728.2 Isoelectric Point: 9.3415 |
| Chromosome | Chromosome/Scaffold: 13 Start: 281923 End: 283448 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 53 | 269 | 0 |
| WKAACASADSTIIYVPKGRYLLGSMAFQGGCKSPQIIFRIDGTLVAPQDYRVLGKSADWLSFEGVNGVSILGGALDAKGPSLWACKASHSNCPSGATTLS FTNSKNIRIRSLLSLNSQMFHIVINGCENVNVQGVRIIAAGNSPNTDGIHVQSSKNVNIIKCSIKTGDDCISIGPGTKNLWIEQITCGPGHGISIGSLAK DLKEEGVQNVTVSGIKI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 336 Download |
| MMNLTRPSHS ILLILFFMLA INSTSALTKY NVLNFGAKPN GKTDSTKAFL MAWKAACASA 60 DSTIIYVPKG RYLLGSMAFQ GGCKSPQIIF RIDGTLVAPQ DYRVLGKSAD WLSFEGVNGV 120 SILGGALDAK GPSLWACKAS HSNCPSGATT LSFTNSKNIR IRSLLSLNSQ MFHIVINGCE 180 NVNVQGVRII AAGNSPNTDG IHVQSSKNVN IIKCSIKTGD DCISIGPGTK NLWIEQITCG 240 PGHGISIGSL AKDLKEEGVQ NVTVSGIKIK DIIYEGIRGT SSTEVAIKFD CSPKNPCTGI 300 RLQNVNLSYL NKPAQSSCSN VRGKALNLVQ PENCL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-57 | 15 | 335 | 387 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 1.0e-63 | 32 | 335 | 370 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-66 | 23 | 332 | 377 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 2.0e-74 | 20 | 334 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 5.0e-103 | 23 | 335 | 374 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23356.1 | 0 | 30 | 335 | 22 | 390 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002262690.1 | 0 | 23 | 335 | 25 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002315106.1 | 0 | 9 | 335 | 9 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524365.1 | 0 | 10 | 335 | 3 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529090.1 | 0 | 2 | 335 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rmg_A | 0.0000000000005 | 23 | 285 | 13 | 249 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1bhe_A | 0.000000000005 | 151 | 313 | 154 | 307 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.0000000009 | 54 | 321 | 15 | 300 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000009 | 54 | 321 | 15 | 300 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000000009 | 54 | 321 | 15 | 300 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
