| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.013G004100.1 |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 42450.1 Isoelectric Point: 9.8001 |
| Chromosome | Chromosome/Scaffold: 13 Start: 289180 End: 290709 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 53 | 383 | 0 |
| WKAACASADSTIIYVPKGRYLLGSMAFQGGCKSPQIIFRIDGTLVAPQDYRVLGKSTDWLSFEGVNGVSILGGALDAKGPSLWACKASHSNCPSGATTLS FTNSKNIRIRSLLSLNSQMFHIVINGCENVNVQGVRIIAAGNSPNTDGIHVQLSKNVNIIKCSIKTGDDCISIGPGTKNLWVEQVTCGPGHGISIGSLAK DLKEEGVQNITMKKTIFLGTQNGLRIKSWARPSTGFVQGVRFMDSLMVNVQNPIVIDQNYCPHNLNCPNQVSGIKIKDIIYEGIRGTSSTQVAIKFDCSS KNPCTGIRLQNVNLSYLNKPAQSSCSNVRGK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| MMNLSRPSHS ILLILFFMLA INSTSALTKY NVLNFGAKPN GKTDSTKAFL MAWKAACASA 60 DSTIIYVPKG RYLLGSMAFQ GGCKSPQIIF RIDGTLVAPQ DYRVLGKSTD WLSFEGVNGV 120 SILGGALDAK GPSLWACKAS HSNCPSGATT LSFTNSKNIR IRSLLSLNSQ MFHIVINGCE 180 NVNVQGVRII AAGNSPNTDG IHVQLSKNVN IIKCSIKTGD DCISIGPGTK NLWVEQVTCG 240 PGHGISIGSL AKDLKEEGVQ NITMKKTIFL GTQNGLRIKS WARPSTGFVQ GVRFMDSLMV 300 NVQNPIVIDQ NYCPHNLNCP NQVSGIKIKD IIYEGIRGTS STQVAIKFDC SSKNPCTGIR 360 LQNVNLSYLN KPAQSSCSNV RGKALNLVRP ESCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-85 | 57 | 380 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-89 | 23 | 391 | 379 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-91 | 32 | 394 | 371 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-104 | 20 | 393 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 7.0e-146 | 2 | 394 | 395 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23356.1 | 0 | 30 | 394 | 22 | 390 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002262690.1 | 0 | 23 | 394 | 25 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002315106.1 | 0 | 9 | 394 | 9 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524365.1 | 0 | 10 | 394 | 3 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529090.1 | 0 | 2 | 394 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-20 | 156 | 334 | 159 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.000000000000001 | 23 | 366 | 13 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.00000000000004 | 48 | 380 | 9 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.00000000000004 | 48 | 380 | 9 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.00000000000004 | 48 | 380 | 9 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
