Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.013G077600.2 |
Family | PL1 |
Protein Properties | Length: 377 Molecular Weight: 41972.8 Isoelectric Point: 9.352 |
Chromosome | Chromosome/Scaffold: 13 Start: 9906684 End: 9907983 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 155 | 360 | 0 |
IQNRPLWITFARGMIIRLKEELLMTSNKTIDGRGANVHIAYGAGITIQFAKNVIIHNIHIHNIFPSKGGKIKDGENHLGLRTRSDGDGISLFGATNVWLD HLSVYKCSDGIIDAIQGSTAITISNCHFTDHNDVMLFGASDSYSADEKMQITVAFTRFGKNLVQRMPRVRFGFVHVVNNDYRHWIMSAIGGSSHPTIISH GNRFRA |
Full Sequence |
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Protein Sequence Length: 377 Download |
MAGVGNKSFS LILYFLCLGV IIPSLEAHIA EYDDYWRERE LQAKENLEKA YNPNPEEVTQ 60 HFNDHVARTL MGFRTNSTRR MLKKQKGGPC GATNPIDQCW RCDRNWERNR KKLADCALGF 120 GRGTTGGKDG PIYVVTDPTD DVLNPSSGTL RHAVIQNRPL WITFARGMII RLKEELLMTS 180 NKTIDGRGAN VHIAYGAGIT IQFAKNVIIH NIHIHNIFPS KGGKIKDGEN HLGLRTRSDG 240 DGISLFGATN VWLDHLSVYK CSDGIIDAIQ GSTAITISNC HFTDHNDVML FGASDSYSAD 300 EKMQITVAFT RFGKNLVQRM PRVRFGFVHV VNNDYRHWIM SAIGGSSHPT IISHGNRFRA 360 PRNIAAKEVS HSILVS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 3.0e-16 | 28 | 82 | 55 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 5.0e-25 | 180 | 363 | 198 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-55 | 173 | 358 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-65 | 168 | 362 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 20 | 370 | 19 | 367 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 20 | 370 | 48 | 396 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 19 | 367 | 18 | 364 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002330086.1 | 0 | 11 | 370 | 8 | 365 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 4 | 370 | 3 | 369 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 94 | 373 | 2 | 283 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 94 | 373 | 2 | 283 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-22 | 129 | 349 | 4 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 5e-18 | 178 | 336 | 146 | 317 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 3krg_A | 8e-18 | 178 | 336 | 125 | 296 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |