Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.013G078000.1 |
Family | PL1 |
Protein Properties | Length: 438 Molecular Weight: 49257.1 Isoelectric Point: 8.8506 |
Chromosome | Chromosome/Scaffold: 13 Start: 10167687 End: 10169329 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 157 | 355 | 0 |
ITFKKSMIIKLKQELIVTSDKTIDARGANVHICYGAGITVQFSRNVIIHGLHIHHIKPATGGIIRDAENHIGLRTASDGDAISLFGATNIWLDHLSLYDS SDGLIDVIQGSTAITISNCHFTDHNEVLLFGASDNYVADEKMQITVALNRFGKGLVDRMPRCRLGFFHVVNNDYTHWFMYAIGGSSHPTIISQGNRYIA |
Full Sequence |
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Protein Sequence Length: 438 Download |
MGFAGYSYSW FLLSFFALIP TLRAHIAEYD EYWKARELEA IENLNKAYHP NPEEVVRHYN 60 DHFVNTMLEY NNTRRVLKGK KNGPCEITNP VDSCWRCDPN WVKNRKRLAD CAPGFARGTT 120 GGKDGKFYVV TDPNDDIANP KPGTLRHAVT QLRPLWITFK KSMIIKLKQE LIVTSDKTID 180 ARGANVHICY GAGITVQFSR NVIIHGLHIH HIKPATGGII RDAENHIGLR TASDGDAISL 240 FGATNIWLDH LSLYDSSDGL IDVIQGSTAI TISNCHFTDH NEVLLFGASD NYVADEKMQI 300 TVALNRFGKG LVDRMPRCRL GFFHVVNNDY THWFMYAIGG SSHPTIISQG NRYIASSIYV 360 TKQVTSRGYL SPEQWNKWNW VSQGDHFING AYFITSGDPN ASKLFGAEKM MPFQPGRLVP 420 KLTRYAGTLH CRIGRPC* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam04431 | Pec_lyase_N | 2.0e-13 | 25 | 77 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. |
COG3866 | PelB | 1.0e-30 | 118 | 351 | 252 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 4.0e-64 | 168 | 353 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 1.0e-70 | 163 | 357 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69904.1 | 0 | 20 | 437 | 22 | 443 | hypothetical protein [Vitis vinifera] |
EMBL | CAN79927.1 | 0 | 18 | 437 | 20 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 17 | 437 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 18 | 437 | 20 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270112.1 | 0 | 20 | 437 | 22 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 89 | 429 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 89 | 429 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-19 | 108 | 344 | 2 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 3krg_A | 0.0000000000005 | 232 | 351 | 180 | 323 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
PDB | 1bn8_A | 0.0000000000008 | 236 | 351 | 205 | 344 | A Chain A, Bacillus Subtilis Pectate Lyase |