Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.013G078300.1 |
Family | PL1 |
Protein Properties | Length: 438 Molecular Weight: 48977.9 Isoelectric Point: 8.8944 |
Chromosome | Chromosome/Scaffold: 13 Start: 10320536 End: 10322224 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 157 | 355 | 0 |
ITFKKSMIIKLEQELIVTSDKTIDARGANVHICKGAGITIQFARNVIIHGLHIHHIKPGNGGMIRDTENHIGLRTASDGDGISLFGATNIWLDHLSLYDC FDGLIDVIQGSTAVTISNCHFTDHTDVMLFGASDSYVADEKMQITVALNHFGKGLVGRMPRCRLGFIHVVNNDYTHWFMYAIGGSSHPTIISQGNKYSA |
Full Sequence |
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Protein Sequence Length: 438 Download |
MGIAGYSYSW FLLSFFVLIP TLEAHIAEYD EYWKARELEA TENLNKAYFP NPEEVVQHYN 60 DHFARTMLEF NSTRRALKGK KKGPCEITNP VDSCWRCDPN WEKNRKRLAD CAPGFARGTI 120 GGKHGKFYVV TDPSDDIANP KPGTLRHAVT QLRPLWITFK KSMIIKLEQE LIVTSDKTID 180 ARGANVHICK GAGITIQFAR NVIIHGLHIH HIKPGNGGMI RDTENHIGLR TASDGDGISL 240 FGATNIWLDH LSLYDCFDGL IDVIQGSTAV TISNCHFTDH TDVMLFGASD SYVADEKMQI 300 TVALNHFGKG LVGRMPRCRL GFIHVVNNDY THWFMYAIGG SSHPTIISQG NKYSASGSYV 360 TKEVTSRGYL PPEQWKKWNW VSQGDQFKNG AYFTPSGDPN ASKLFGANKM MPFKPGRLVP 420 KLTRYAGTLH CRTGRPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.0008 | 192 | 295 | 110 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
pfam04431 | Pec_lyase_N | 4.0e-14 | 25 | 77 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 4.0e-29 | 118 | 370 | 274 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-65 | 169 | 353 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-75 | 163 | 357 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 17 | 437 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 17 | 437 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 17 | 437 | 19 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 11 | 437 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 5 | 437 | 2 | 435 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 89 | 429 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 89 | 429 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-19 | 108 | 359 | 2 | 245 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000005 | 171 | 354 | 128 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3krg_A | 0.000000000002 | 232 | 365 | 180 | 337 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |