Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.013G114800.4 |
Family | GH3 |
Protein Properties | Length: 534 Molecular Weight: 58393.8 Isoelectric Point: 7.1513 |
Chromosome | Chromosome/Scaffold: 13 Start: 28433119 End: 28436604 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 11 | 245 | 0 |
ATRMQIPMIYGIDAVHGNNNVYKATIFPHNIGLGATRDPKLVKKIGAATALESRATGIPYVFAPCIAVCRDPRWGRCYESYSEDPHLVDAMTEIVPGLQG DMPAKSSKGVPFVAGNKNVAACAKHYVGDGGTTKGINENNTVINWHDLLSIHMPGYYTSIIKGVSTVMVSYSSWNGVKMHANRDLVTGFLKNKLRFRGFV ISDWEGIDRITYPPHANYTYSIQAAIGSGIDMVMV |
Full Sequence |
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Protein Sequence Length: 534 Download |
MINDFQKGSL ATRMQIPMIY GIDAVHGNNN VYKATIFPHN IGLGATRDPK LVKKIGAATA 60 LESRATGIPY VFAPCIAVCR DPRWGRCYES YSEDPHLVDA MTEIVPGLQG DMPAKSSKGV 120 PFVAGNKNVA ACAKHYVGDG GTTKGINENN TVINWHDLLS IHMPGYYTSI IKGVSTVMVS 180 YSSWNGVKMH ANRDLVTGFL KNKLRFRGFV ISDWEGIDRI TYPPHANYTY SIQAAIGSGI 240 DMVMVPYDYS SFIDGLTFLV KNNFIPMSRI DDAVKRILRV KFAVGLFENP LADNSLVDQL 300 GRQEHRELAR EAVRRSLVLL KNGHYADQPL LPLPKKTSKI LVAGSHADNL GYQCGGWTIE 360 WQGFSGNDLT NGTTVLTAIK NTVDSSTNVV YEENPDPKFV KSNNFSCAIV VVGEHPYVET 420 KGDSMNLTIP EPGPTTIRNV CGALKCVVIL MSGRPVVIEP DIDSMDALVA AWLPGSEGQG 480 VADVLFGDYG FSGKLPRTWF KTVDQLPMNV GDPHYDPLFP FGFGLTTEPT KAY* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 4.0e-41 | 31 | 509 | 530 | + Probable beta-xylosidase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 3.0e-53 | 317 | 526 | 228 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 1.0e-78 | 12 | 526 | 582 | + beta-D-glucoside glucohydrolase; Provisional | ||
COG1472 | BglX | 3.0e-83 | 11 | 359 | 356 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 6.0e-84 | 2 | 280 | 283 | + Glycosyl hydrolase family 3 N terminal domain. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAZ15705.1 | 0 | 1 | 533 | 95 | 627 | endo-alpha-1,4-glucanase [Gossypium hirsutum] |
GenBank | ABK95015.1 | 0 | 1 | 531 | 94 | 624 | unknown [Populus trichocarpa] |
RefSeq | XP_002266470.1 | 0 | 1 | 532 | 96 | 627 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319151.1 | 0 | 1 | 531 | 71 | 601 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002325849.1 | 0 | 1 | 531 | 86 | 611 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1j8v_A | 0 | 1 | 533 | 73 | 605 | A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi |
PDB | 1iex_A | 0 | 1 | 533 | 73 | 605 | A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi |
PDB | 1iew_A | 0 | 1 | 533 | 73 | 605 | A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi |
PDB | 1iev_A | 0 | 1 | 533 | 73 | 605 | A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi |
PDB | 1ieq_A | 0 | 1 | 533 | 73 | 605 | A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO784016 | 406 | 1 | 406 | 0 |
DW500162 | 318 | 202 | 519 | 0 |
DT552183 | 299 | 113 | 411 | 0 |
DT569328 | 316 | 186 | 501 | 0 |
GR716701 | 285 | 169 | 453 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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