| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.013G124100.1 |
| Family | GH2 |
| Protein Properties | Length: 776 Molecular Weight: 88759.2 Isoelectric Point: 7.3677 |
| Chromosome | Chromosome/Scaffold: 13 Start: 32008992 End: 32012801 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH2 | 27 | 532 | 0 |
| VYLHATTELENRSSWVAECSLNIQVTTELEGSVCLMEHLKTQHVSIPPRARIQYTFPQLFFYKPNLWWPNGMGKQSLYNVSITVDVKGHGESDSWGQLFG FRKIESHIDSATGGRLFKVNGQPIFIRGGNWILSDCLLRLSKERYKTDIKFHADMNLNMIRCWGGGLAERPEFYHYCDVYGLLVWQEFWITGDVDGRGVP VSNPNGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQVPPADINTALKNDLKLHPFFESQSEYITSVEGLSTAYKDPSQYLDGTRVYIQGSMWDGFAN GKGGFTDGPYEIQNPEDPFKDNFYKYGFNPEVGSVGIPVAATIRATMPCEGWQIPLFKKLPNGYTEEVPNPIWQYHKYLPYSKPGKVHDQIELYGTPEDL DDFCLKAQLVNYIQYRALLEGWTSRMWSKYTGVLIWKTQNPWTGLRGQFYDHLLDQTAGFFGCRCAAEPIHVQLNLATYFIEVVNTTAEELSNVAIEASV WDLEGA | |||
| Full Sequence |
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| Protein Sequence Length: 776 Download |
| MHLLWIQPVK IIDPHLVSSF FDRYTRVYLH ATTELENRSS WVAECSLNIQ VTTELEGSVC 60 LMEHLKTQHV SIPPRARIQY TFPQLFFYKP NLWWPNGMGK QSLYNVSITV DVKGHGESDS 120 WGQLFGFRKI ESHIDSATGG RLFKVNGQPI FIRGGNWILS DCLLRLSKER YKTDIKFHAD 180 MNLNMIRCWG GGLAERPEFY HYCDVYGLLV WQEFWITGDV DGRGVPVSNP NGPLDHDLFM 240 LCARDTVKLL RNHPSLALWV GGNEQVPPAD INTALKNDLK LHPFFESQSE YITSVEGLST 300 AYKDPSQYLD GTRVYIQGSM WDGFANGKGG FTDGPYEIQN PEDPFKDNFY KYGFNPEVGS 360 VGIPVAATIR ATMPCEGWQI PLFKKLPNGY TEEVPNPIWQ YHKYLPYSKP GKVHDQIELY 420 GTPEDLDDFC LKAQLVNYIQ YRALLEGWTS RMWSKYTGVL IWKTQNPWTG LRGQFYDHLL 480 DQTAGFFGCR CAAEPIHVQL NLATYFIEVV NTTAEELSNV AIEASVWDLE GACPYYKVFD 540 KLSLPPKKVV SISEMKYPKS KNPKPVFFLL LKLYHVSNYS IVSRNFYWLH VSGGDYKLLE 600 PYRNKRIPLK ITSKTFIKGS SYEVEMKVLN KSKKPDPKTL TYKNNFAVRN DDSDFDMTSL 660 KPIPDTRTDL KQPTGLFQRL YRQFSRESDS LRVAEINGSD GGVAFFLNFS VHGAKLEHEE 720 GEDSRILPVH YSDNYFSLVP GEEMSIKISF KVPPGVSPRV TLRGWNYHHG VHTVL* 780 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02836 | Glyco_hydro_2_C | 0.0002 | 142 | 272 | 139 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK09525 | lacZ | 0.0001 | 126 | 264 | 153 | + beta-D-galactosidase; Reviewed | ||
| pfam00703 | Glyco_hydro_2 | 3.0e-8 | 9 | 128 | 120 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK10340 | ebgA | 7.0e-9 | 7 | 264 | 271 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| COG3250 | LacZ | 4.0e-25 | 90 | 470 | 403 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK84953.2 | 0 | 29 | 775 | 40 | 786 | putative beta-mannosidase [Gossypium hirsutum] |
| GenBank | AAO27794.1 | 0 | 8 | 775 | 209 | 976 | glycosyl hydrolase [Gossypium hirsutum] |
| RefSeq | XP_002284576.1 | 0 | 8 | 768 | 208 | 967 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002319539.1 | 0 | 8 | 770 | 208 | 969 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512381.1 | 0 | 8 | 775 | 208 | 973 | beta-mannosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 7e-40 | 67 | 589 | 275 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 7e-40 | 67 | 589 | 275 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 2e-39 | 67 | 589 | 275 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| ES793920 | 372 | 172 | 541 | 0 |
| CO118180 | 277 | 26 | 302 | 0 |
| ES823162 | 312 | 411 | 722 | 0 |
| ES832790 | 359 | 297 | 655 | 0 |
| ES823162 | 93 | 675 | 766 | 6e-18 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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