y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.013G207800.1 |
Family | CE8 |
Protein Properties | Length: 330 Molecular Weight: 36402.1 Isoelectric Point: 7.9303 |
Chromosome | Chromosome/Scaffold: 13 Start: 51904184 End: 51905558 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 31 | 306 | 0 |
IIVDQSGHGSFTTIQNAIDSVPSNNEVWTLIHVKAGIYNEKVTIPRDKPRILLQGESDSSTIVQFGDGGDSIRSSTLSLYADDFVAMDITFKNTYNLEPG KPITWAPAALINADMAAFYRCGFVSVQDTLTDSEGRHYFENCYIEGAVDFIWGNGRSIYQGCNLNVTASAQRSGMAAYITAQARDSIVDHSGFVFKEGWI FGTGPAYLGRAYKPYARVLFYRTRMSGIIVPQGWAAWNYVGKENSIVYAEVDCTGAGANKSKRVAWEKKLSSKDLS |
Full Sequence |
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Protein Sequence Length: 330 Download |
MQFFNFFLNS SVLVLVLLMS TKTDGQVRQT IIVDQSGHGS FTTIQNAIDS VPSNNEVWTL 60 IHVKAGIYNE KVTIPRDKPR ILLQGESDSS TIVQFGDGGD SIRSSTLSLY ADDFVAMDIT 120 FKNTYNLEPG KPITWAPAAL INADMAAFYR CGFVSVQDTL TDSEGRHYFE NCYIEGAVDF 180 IWGNGRSIYQ GCNLNVTASA QRSGMAAYIT AQARDSIVDH SGFVFKEGWI FGTGPAYLGR 240 AYKPYARVLF YRTRMSGIIV PQGWAAWNYV GKENSIVYAE VDCTGAGANK SKRVAWEKKL 300 SSKDLSYLLN INTFINNGGW IQRQPKGGS* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 2.0e-84 | 30 | 322 | 305 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 2.0e-85 | 28 | 321 | 296 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-86 | 31 | 296 | 266 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 5.0e-87 | 26 | 325 | 303 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 1.0e-120 | 19 | 325 | 310 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB01354.1 | 0 | 11 | 325 | 14 | 328 | pectin methylesterase-like protein [Arabidopsis thaliana] |
EMBL | CBI40838.1 | 0 | 29 | 325 | 43 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189055.1 | 0 | 13 | 325 | 16 | 332 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 13 | 325 | 14 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002512520.1 | 0 | 1 | 310 | 1 | 316 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 31 | 322 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-35 | 32 | 322 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 4e-17 | 40 | 213 | 17 | 211 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 4e-17 | 40 | 213 | 17 | 211 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 4e-17 | 40 | 213 | 17 | 211 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |