| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.013G209100.1 |
| Family | GH28 |
| Protein Properties | Length: 458 Molecular Weight: 49914.1 Isoelectric Point: 7.2671 |
| Chromosome | Chromosome/Scaffold: 13 Start: 52064928 End: 52066886 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 88 | 428 | 0 |
| ACQIKSAVLLVPDGYSFMLQSTIFSGPCKTVGLVFRIDGTIMPPDGPDSWPRNISKRQWLVFYRINGMSMQGAGLVDGKGENWWNLPCKPHKGVNGTTMP GPCDSPVAIRFFMSSKLTIKGLKIKNSPQFHFRFDACHGVRVESLTIKAPAQSPNTDGIHIENTNNVQIYNSIISNGDDCISIGAGCYDVDINNITCGPS HGISIGSLGINKSRACVSNISVSDSVIQHSNNGIRIKTWQGGSGCVSKVEFSNIHMEAVRNPIIIDQYYCLTKNCSNQTSAVVINDISYSNIKGSFDVRS PPMSFACSDSIPCTNLKLTQVELLPAAKGRTVANPFCWNAY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 458 Download |
| MPFHQVLLLL FFIFSCLFFV TIQSRHHYGH SEQEQFHIVS HVSHPPSLAP EPAVAGPSYS 60 VFNVLDFGAV GDGVTDDTQA FKLAWDMACQ IKSAVLLVPD GYSFMLQSTI FSGPCKTVGL 120 VFRIDGTIMP PDGPDSWPRN ISKRQWLVFY RINGMSMQGA GLVDGKGENW WNLPCKPHKG 180 VNGTTMPGPC DSPVAIRFFM SSKLTIKGLK IKNSPQFHFR FDACHGVRVE SLTIKAPAQS 240 PNTDGIHIEN TNNVQIYNSI ISNGDDCISI GAGCYDVDIN NITCGPSHGI SIGSLGINKS 300 RACVSNISVS DSVIQHSNNG IRIKTWQGGS GCVSKVEFSN IHMEAVRNPI IIDQYYCLTK 360 NCSNQTSAVV INDISYSNIK GSFDVRSPPM SFACSDSIPC TNLKLTQVEL LPAAKGRTVA 420 NPFCWNAYGT VLKQTIPPVY CLMEETNATI DNTLLCG* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-78 | 58 | 442 | 390 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 9.0e-79 | 54 | 438 | 391 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-84 | 90 | 410 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-99 | 60 | 434 | 383 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-118 | 33 | 438 | 409 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37004.1 | 0 | 58 | 454 | 85 | 481 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002276945.1 | 0 | 1 | 450 | 1 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002318932.1 | 0 | 1 | 444 | 1 | 458 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330008.1 | 0 | 61 | 444 | 21 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512560.1 | 0 | 1 | 444 | 1 | 456 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 3e-24 | 116 | 410 | 32 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-24 | 116 | 410 | 32 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-24 | 116 | 410 | 32 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-24 | 116 | 410 | 32 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 3e-24 | 116 | 410 | 32 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
