Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.013G217500.1 |
Family | GH18 |
Protein Properties | Length: 744 Molecular Weight: 83559.5 Isoelectric Point: 9.2494 |
Chromosome | Chromosome/Scaffold: 13 Start: 53756436 End: 53760689 |
Description | lectin protein kinase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 40 | 330 | 3.9e-37 |
LPVSDINSALFTHLFASFAFINKTSYQLFINSSDEQSFSNFTSIVKLKNPSITTILSIWVARSESTTFSLIVNETSRRKSFIESSVKTARLYGFHGLDLC GFQPTNGTSLGTFLDEWRAEVASESRNTGKTRLLLTMSAGRLPIVNSVNYPIESAKRNLDWVNILAYDYYVPRLERGFPADKLVLGLPYHGYAWALVNGS DSGINSVAFGPDHNSDDGSIGYSGIKYLIRKSGYDVGAVYNSTYVVNYWKFGRSTWINFDDMKAIKAKVSYAKVKGLLGYNAFQIANDDNW |
Full Sequence |
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Protein Sequence Length: 744 Download |
MASNKPIFFF LLLLFLSLKL QSSSSQTWVK AGHWTSSSYL PVSDINSALF THLFASFAFI 60 NKTSYQLFIN SSDEQSFSNF TSIVKLKNPS ITTILSIWVA RSESTTFSLI VNETSRRKSF 120 IESSVKTARL YGFHGLDLCG FQPTNGTSLG TFLDEWRAEV ASESRNTGKT RLLLTMSAGR 180 LPIVNSVNYP IESAKRNLDW VNILAYDYYV PRLERGFPAD KLVLGLPYHG YAWALVNGSD 240 SGINSVAFGP DHNSDDGSIG YSGIKYLIRK SGYDVGAVYN STYVVNYWKF GRSTWINFDD 300 MKAIKAKVSY AKVKGLLGYN AFQIANDDNW VLSQAAYAIG TTQPKKHQLL VIVLVTAAAM 360 VLLITALVYY LQHKIFKSQG LLGALKMSVS LIRTKISGER KHENGDPNLQ AFTFATIKAA 420 TNNFSNENKL GEGGYGPVYK GELLNGQEIA VKRLSRSSNQ GLEEFKNEVN LTAKLQHVNL 480 VRVLGICTEN EEKMLVYELM LNKSLDFYLY DPFKRHLLDW RKRVSIIEGV TQGLLYLQEY 540 SNYTIIHLDI KASNILLDSE MNPKISDFGM AKFFKKDELE AKTNRIVGTY GYVPPEYVKN 600 GIYSTKYDVY SFGVLLLQII SGKRNSNLYG CHENLNLLEY AYELWKQDRG AEFFDASLDD 660 SSLSCKRIRC MQLALLCVQE NPADRPSMVD IFAILKNESN VAISVPKQPA YSITRDERKG 720 SIDIGRKNVF SVNDASITQV EPR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00704 | Glyco_hydro_18 | 2.0e-42 | 41 | 327 | 323 | + Glycosyl hydrolases family 18. | ||
smart00219 | TyrKc | 7.0e-43 | 425 | 695 | 289 | + Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily. | ||
cd00180 | PKc | 1.0e-44 | 430 | 619 | 194 | + Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. | ||
smart00636 | Glyco_18 | 1.0e-48 | 29 | 327 | 345 | + Glyco_18 domain. | ||
cd02879 | GH18_plant_chitinase_class_V | 4.0e-95 | 27 | 333 | 342 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0004672 | protein kinase activity |
GO:0005524 | ATP binding |
GO:0005975 | carbohydrate metabolic process |
GO:0006468 | protein phosphorylation |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI35714.1 | 0 | 12 | 743 | 403 | 1130 | unnamed protein product [Vitis vinifera] |
EMBL | CBI35714.1 | 0 | 23 | 438 | 20 | 393 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002263709.1 | 0 | 23 | 743 | 20 | 764 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002263792.1 | 0 | 12 | 743 | 8 | 753 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270006.1 | 0 | 23 | 743 | 20 | 765 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3alg_A | 0 | 29 | 336 | 4 | 341 | A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From Nicotiana Tobaccum In Complex With Nag4 |
PDB | 3alf_A | 0 | 29 | 336 | 4 | 341 | A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum |
PDB | 3aqu_D | 0 | 26 | 336 | 2 | 339 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
PDB | 3aqu_C | 0 | 26 | 336 | 2 | 339 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
PDB | 3aqu_B | 0 | 26 | 336 | 2 | 339 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |