Basic Information | |
---|---|
Species | Gossypium raimondii |
Cazyme ID | Gorai.N009100.1 |
Family | GH79 |
Protein Properties | Length: 349 Molecular Weight: 38306.4 Isoelectric Point: 7.1949 |
Chromosome | Chromosome/Scaffold: 20 Start: 16754 End: 18253 |
Description | glucuronidase 1 |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH79 | 2 | 342 | 0 |
QYTISKGYKVDSYEFGNQLFGAGMGASVEAEQYGKDIVVLKNLVKELHPDPKTQPKVLGHSGYYDEKWFNSFLEVLGHDVVDGVTHHIYNLGPGDDPNMI AKIQDPSYFNQVSQTHKGVLNIVNKFKPQSGAWVSESGRALHGGAKDLSPTFADGFWYLDQLGMASTNNQKAFCRRTLIGGNYALLNTTTSIPNLDYYGA LLGHRLMGSTVLAVTPESNPNLHVYAHCAKKKPGISIIFINLSKDSSFSVTLSNYERQGRNLRSTDVVKPNFEFRGSKDIEEYHLAALAGNIRGQIVLLN DVPMVPTETFDIPAVEPKLVNASTPIHIAAHSIVYVTIRDF |
Full Sequence |
---|
Protein Sequence Length: 349 Download |
MQYTISKGYK VDSYEFGNQL FGAGMGASVE AEQYGKDIVV LKNLVKELHP DPKTQPKVLG 60 HSGYYDEKWF NSFLEVLGHD VVDGVTHHIY NLGPGDDPNM IAKIQDPSYF NQVSQTHKGV 120 LNIVNKFKPQ SGAWVSESGR ALHGGAKDLS PTFADGFWYL DQLGMASTNN QKAFCRRTLI 180 GGNYALLNTT TSIPNLDYYG ALLGHRLMGS TVLAVTPESN PNLHVYAHCA KKKPGISIIF 240 INLSKDSSFS VTLSNYERQG RNLRSTDVVK PNFEFRGSKD IEEYHLAALA GNIRGQIVLL 300 NDVPMVPTET FDIPAVEPKL VNASTPIHIA AHSIVYVTIR DFQAPACA* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03662 | Glyco_hydro_79n | 6.0e-70 | 1 | 164 | 164 | + Glycosyl hydrolase family 79, N-terminal domain. Family of endo-beta-N-glucuronidase, or heparanase. Heparan sulfate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulfate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular micro-environment. Heparanase degrades HS at specific intra-chain sites. The enzyme is synthesised as a latent approximately 65 kDa protein that is processed at the N-terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumour cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016020 | membrane |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27258.1 | 0 | 1 | 347 | 186 | 523 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274743.1 | 0 | 1 | 347 | 184 | 521 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315010.1 | 0 | 1 | 348 | 180 | 518 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512114.1 | 0 | 1 | 346 | 189 | 529 | Heparanase precursor, putative [Ricinus communis] |
RefSeq | XP_002514696.1 | 0 | 1 | 348 | 178 | 539 | Heparanase-2, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vo0_A | 0.005 | 65 | 252 | 219 | 409 | A Chain A, Crystal Structure Of Beta-Glucuronidase From Acidobacterium Capsulatum |
PDB | 3vnz_A | 0.005 | 65 | 252 | 219 | 409 | A Chain A, Crystal Structure Of Beta-Glucuronidase From Acidobacterium Capsulatum |
PDB | 3vny_A | 0.005 | 65 | 252 | 219 | 409 | A Chain A, Crystal Structure Of Beta-Glucuronidase From Acidobacterium Capsulatum |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
AJ805815 | 234 | 20 | 253 | 0 |
JK986839 | 284 | 36 | 319 | 0 |
AJ802651 | 224 | 3 | 226 | 0 |
HO797031 | 364 | 1 | 348 | 0 |
DV682577 | 227 | 29 | 255 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|