y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.N020200.1 |
Family | PL1 |
Protein Properties | Length: 435 Molecular Weight: 48039.4 Isoelectric Point: 6.9454 |
Chromosome | Chromosome/Scaffold: 289 Start: 3234 End: 4902 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 155 | 353 | 0 |
ITFKGSMTIKLQQELIVTSDKTIDARGANVEICNGAGITIQFAKNIIIHGLQIHHIIPTKGGKIKDGENHHGLRGDSDGDAVSIFGATNVWLDHLALHHC TDGLIDVVQGSTAVTVSNCHFTDHNDVMLFGASDSYSADKKMQVTVALNHFGKGLVERMPRCRFGFIHVVNNDYNHWFLYAIGGTSNPTIISQGNRYSA |
Full Sequence |
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Protein Sequence Length: 435 Download |
MGISSYSFFL FLFVVIIPTL EAHIAEYDEY WTARELEAIE NLDKAYHSNP EEVVRHYNDH 60 FSRTMLEFYI TKRVLAESKK GPCEVTNHVD SCWRCDPDWE KNRKKLADCA PGFARGTIGG 120 KDGEIYVVTD PIDNAADPKP GTLRHAVTQT GPLWITFKGS MTIKLQQELI VTSDKTIDAR 180 GANVEICNGA GITIQFAKNI IIHGLQIHHI IPTKGGKIKD GENHHGLRGD SDGDAVSIFG 240 ATNVWLDHLA LHHCTDGLID VVQGSTAVTV SNCHFTDHND VMLFGASDSY SADKKMQVTV 300 ALNHFGKGLV ERMPRCRFGF IHVVNNDYNH WFLYAIGGTS NPTIISQGNR YSAPGFGAKE 360 VTCRGLLKPG QWKNWNWVSQ GDHFENGAFF TPSGSPSASK QFGADKMMPF KPGQMVPELT 420 KYAGPLSCTI GRSC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 7.0e-11 | 23 | 65 | 43 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 7.0e-29 | 116 | 424 | 338 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-59 | 166 | 351 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-65 | 161 | 355 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 15 | 434 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 15 | 434 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 14 | 434 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 12 | 434 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 434 | 4 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 87 | 427 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 87 | 427 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-22 | 106 | 342 | 2 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 3e-16 | 116 | 352 | 17 | 277 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.00000000000003 | 169 | 352 | 128 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |