Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.N020300.1 |
Family | PL1 |
Protein Properties | Length: 393 Molecular Weight: 43593.1 Isoelectric Point: 6.6701 |
Chromosome | Chromosome/Scaffold: 289 Start: 6672 End: 7987 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 125 | 331 | 0 |
IDNAADPKSGTLRSMTIKLQQELIVTSDKTIDARGANVEICNGAGITIQFAKNIIIHSLQIHHIIPTKGGKIKDGENHHGLRGDSDGDGVSLFGATNVWL DHHALHHCTDGLIDVVQGSTAVTVSNCHFTDHNDVMLFGASDCYSADKKMQVTVALNHFGKGLVERMPRCRFGFIHVVNNDYNHWFLYAIGGTSNPTIIS QGNRYSA |
Full Sequence |
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Protein Sequence Length: 393 Download |
FLSVFFVVII PTLEAHIAEY DEYWTARELE AIENLDKAYH SNPEEVVRHY NDHFSRTMLE 60 FYITKRVLAE SKKGPCEVTN HVDSCWRCDP DWEKNGKKLA DCAPGFARGT TGGKDSEFYV 120 VTDPIDNAAD PKSGTLRSMT IKLQQELIVT SDKTIDARGA NVEICNGAGI TIQFAKNIII 180 HSLQIHHIIP TKGGKIKDGE NHHGLRGDSD GDGVSLFGAT NVWLDHHALH HCTDGLIDVV 240 QGSTAVTVSN CHFTDHNDVM LFGASDCYSA DKKMQVTVAL NHFGKGLVER MPRCRFGFIH 300 VVNNDYNHWF LYAIGGTSNP TIISQGNRYS APGFGAKEVT CRGLLKPGQW KNWSWVSQGD 360 HFENGAFFTP SGNPSAGKQF GADKMMPFKP GQM |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 8.0e-11 | 16 | 58 | 43 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-25 | 109 | 327 | 245 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-57 | 144 | 329 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-62 | 139 | 333 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 8 | 391 | 19 | 418 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 8 | 391 | 48 | 447 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 7 | 391 | 18 | 422 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 2 | 391 | 1 | 408 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 6 | 391 | 17 | 419 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 80 | 392 | 2 | 333 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 80 | 392 | 2 | 333 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-17 | 138 | 320 | 55 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 123 | 330 | 98 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000004 | 113 | 330 | 42 | 277 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |