y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.N023200.1 |
Family | CE8 |
Protein Properties | Length: 305 Molecular Weight: 33528.9 Isoelectric Point: 7.4475 |
Chromosome | Chromosome/Scaffold: 492 Start: 1303 End: 3894 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 57 | 297 | 0 |
KVMQGGGGEFDTITKAIESVPSGNAKRVIISIGPGSYKEKIRIERNKPFITLLGDPKNMPNLTFDGTAKQYGTVDSATLITESNYFVGANLNIVNSAPRP DGKMVGAQAVALRVSGDRSAFYNCKIIGFQDTLCDDRGNHFFKDCHIRGTVDFIFGSGTSLYLNTEIFVVGDPEGDSKMAIITAQARESSSEDTGYSFVH GRITGTAKDVFLGRAWKSSPRVVYSYTEMDEIVHPGGWSSN |
Full Sequence |
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Protein Sequence Length: 305 Download |
MSRYIRTCVA TKDSIRSSWD IFRVEAWFNG IIKPVKERGT TLDPELVQAE TEPRIIKVMQ 60 GGGGEFDTIT KAIESVPSGN AKRVIISIGP GSYKEKIRIE RNKPFITLLG DPKNMPNLTF 120 DGTAKQYGTV DSATLITESN YFVGANLNIV NSAPRPDGKM VGAQAVALRV SGDRSAFYNC 180 KIIGFQDTLC DDRGNHFFKD CHIRGTVDFI FGSGTSLYLN TEIFVVGDPE GDSKMAIITA 240 QARESSSEDT GYSFVHGRIT GTAKDVFLGR AWKSSPRVVY SYTEMDEIVH PGGWSSNRQP 300 ERAE* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 3.0e-63 | 54 | 302 | 259 | + pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-64 | 54 | 294 | 248 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 6.0e-65 | 55 | 302 | 252 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-76 | 62 | 302 | 248 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 2.0e-174 | 20 | 302 | 283 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI38547.1 | 0 | 9 | 302 | 22 | 311 | unnamed protein product [Vitis vinifera] |
EMBL | CBI38548.1 | 0 | 20 | 302 | 37 | 316 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277388.1 | 0 | 20 | 302 | 33 | 312 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309337.1 | 0 | 5 | 302 | 21 | 315 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 5 | 302 | 17 | 311 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-31 | 53 | 294 | 7 | 249 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-29 | 58 | 295 | 7 | 246 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 2e-22 | 49 | 223 | 1 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-22 | 49 | 223 | 1 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 2e-22 | 49 | 223 | 1 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CO122709 | 285 | 20 | 304 | 0 |
CO113082 | 269 | 23 | 291 | 0 |
CO102573 | 259 | 41 | 299 | 0 |
CO127213 | 252 | 20 | 271 | 0 |
CO125187 | 247 | 23 | 269 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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