| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g01780.1 |
| Family | GT47 |
| Protein Properties | Length: 551 Molecular Weight: 62460.9 Isoelectric Point: 7.5266 |
| Chromosome | Chromosome/Scaffold: 1 Start: 412579 End: 415830 |
| Description | Exostosin family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT47 | 215 | 501 | 0 |
| RLLKVFVYHDGAKPIFHSPELKGIYASEGWFMKLMEGNQHFVVRDPNRAHLFYLPYSSRQLEHNLYVPGSNTIEPLSIFVKKYIDFISTKFPYWNRTKGA DHFFVACHDWGPYTTKLHDELRKNTIKALCNADLSEGVFIHGRDVSLPETFLRSPRRPLRGIGGKPAAERSILAFFAGQMHGRVRPVLLQYWGGKDADMR IYDRLPHRITRRMNYIQHMKSSKYCICPMGYEVNSPRIVEAIYYECVPVIIADNFVLPFDDALNWSAFSVVIPEKDVPKLKQILLAI | |||
| Full Sequence |
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| Protein Sequence Length: 551 Download |
| MPSPLPCNLL TRRRALTACA AVAALTAAAA LFLLATPPTE DPTHPYLLAS LLHNNTSNQP 60 DSAAASQPPL PSTSILQLQT NLPSGFTTVP SMFLVPSPSP AENLDDGSME ETDPPDLKEN 120 PPAESAPFLQ EPISSGSPIR RSDIYNKGHD MKDHAMLPPR PEVPIPLWST AADEELIYAK 180 KEITIAPLVS NDPDLHAPLF RNVSVFRRSY ELMERLLKVF VYHDGAKPIF HSPELKGIYA 240 SEGWFMKLME GNQHFVVRDP NRAHLFYLPY SSRQLEHNLY VPGSNTIEPL SIFVKKYIDF 300 ISTKFPYWNR TKGADHFFVA CHDWGPYTTK LHDELRKNTI KALCNADLSE GVFIHGRDVS 360 LPETFLRSPR RPLRGIGGKP AAERSILAFF AGQMHGRVRP VLLQYWGGKD ADMRIYDRLP 420 HRITRRMNYI QHMKSSKYCI CPMGYEVNSP RIVEAIYYEC VPVIIADNFV LPFDDALNWS 480 AFSVVIPEKD VPKLKQILLA IPDDQYMAMQ SNVQRVQKHF IWHPNPIKYD IFHMILHSIW 540 YSRVNQIQIE * 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 7.0e-66 | 213 | 501 | 305 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003674 | molecular_function |
| GO:0008150 | biological_process |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23466.1 | 0 | 167 | 549 | 153 | 535 | unnamed protein product [Vitis vinifera] |
| GenBank | EEC69788.1 | 0 | 1 | 550 | 1 | 536 | hypothetical protein OsI_00072 [Oryza sativa Indica Group] |
| RefSeq | NP_001041784.1 | 0 | 1 | 550 | 1 | 550 | Os01g0107700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002269459.1 | 0 | 167 | 549 | 153 | 535 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002457517.1 | 0 | 60 | 548 | 79 | 521 | hypothetical protein SORBIDRAFT_03g008610 [Sorghum bicolor] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GT051299 | 334 | 204 | 536 | 0 |
| BX834842 | 336 | 214 | 548 | 0 |
| HO277525 | 219 | 325 | 543 | 0 |
| ES808098 | 339 | 182 | 520 | 0 |
| CA255760 | 216 | 325 | 540 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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