| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g04290.1 |
| Family | GH10 |
| Protein Properties | Length: 568 Molecular Weight: 62247.3 Isoelectric Point: 6.1803 |
| Chromosome | Chromosome/Scaffold: 1 Start: 1906978 End: 1909667 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 220 | 504 | 0 |
| VVQVENSFPIGACINKTAIQNPAFVDFFTKHFDWAVLENELKWYYTEAVQGQVSYSDADELIAFCDRHGKPVRGHCIFWAVENVVQPWVRALNGDQLRAA VEGRLRSLVTRYGGRFPHYEVNNEMLHGAFFQQRLGDDINARMFRETAQMDPSPALFVNDYNVESANDPNATPERYVELVTDLQKRGAAVGGIGVQGHVT HPVGDVICDALDRLAVTGLPVWITELDVSAADEAVRADDLEIVLREAFAHPAVEGIMLWGFMQGNMWRSHAHLVDADGKLNEAGH | |||
| Full Sequence |
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| Protein Sequence Length: 568 Download |
| MAFTEETTHL VMNHVEHCED GGGLAVAGWT PSGSCTLSVH DDPAPETPPP HPLSATEDDA 60 DEPRPRPSGR YVLAAHRAGE RDGLCRELSR APAAKVTYRV AGWVGLQGAG AADGCCHAVR 120 VEVCTDDGRP VGGGVVVAEA GKWGEIMGSF RVDDDEPPRC AKVFVHGPPA GVDLKVMDLQ 180 VFAVNKIARL RHLRKKTDKV RKRDVVLKLG RRTGGTAIRV VQVENSFPIG ACINKTAIQN 240 PAFVDFFTKH FDWAVLENEL KWYYTEAVQG QVSYSDADEL IAFCDRHGKP VRGHCIFWAV 300 ENVVQPWVRA LNGDQLRAAV EGRLRSLVTR YGGRFPHYEV NNEMLHGAFF QQRLGDDINA 360 RMFRETAQMD PSPALFVNDY NVESANDPNA TPERYVELVT DLQKRGAAVG GIGVQGHVTH 420 PVGDVICDAL DRLAVTGLPV WITELDVSAA DEAVRADDLE IVLREAFAHP AVEGIMLWGF 480 MQGNMWRSHA HLVDADGKLN EAGHRYVGLR QEWTSHARGQ VDGSGHFKFR GFHGKYVVQL 540 TTGAGEMKYQ QFDVGKGDGP LVLDMDL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 9.0e-34 | 249 | 490 | 263 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-76 | 224 | 502 | 299 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 5.0e-77 | 260 | 503 | 265 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF84241.1 | 0 | 1 | 567 | 1 | 591 | unknown [Zea mays] |
| GenBank | EAY72425.1 | 0 | 1 | 567 | 1 | 567 | hypothetical protein OsI_00279 [Oryza sativa Indica Group] |
| GenBank | EEE53821.1 | 0 | 1 | 567 | 1 | 575 | hypothetical protein OsJ_00270 [Oryza sativa Japonica Group] |
| RefSeq | NP_001147589.1 | 0 | 1 | 567 | 1 | 585 | endo-1,4-beta-xylanase [Zea mays] |
| RefSeq | XP_002455242.1 | 0 | 9 | 567 | 18 | 594 | hypothetical protein SORBIDRAFT_03g006980 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1i1x_A | 3e-28 | 257 | 500 | 46 | 289 | A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) |
| PDB | 1i1w_A | 3e-28 | 257 | 500 | 46 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1nq6_A | 3e-28 | 229 | 501 | 15 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 4e-28 | 257 | 500 | 46 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1xyz_B | 4e-28 | 214 | 486 | 24 | 313 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FL874412 | 259 | 213 | 471 | 0 |
| FL875205 | 240 | 283 | 522 | 0 |
| EG387260 | 230 | 213 | 442 | 0 |
| GO850973 | 325 | 155 | 475 | 0 |
| GT037746 | 298 | 271 | 568 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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