| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g04300.1 |
| Family | CBM22 |
| Protein Properties | Length: 558 Molecular Weight: 61364.1 Isoelectric Point: 4.9757 |
| Chromosome | Chromosome/Scaffold: 1 Start: 1912561 End: 1915094 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 12 | 156 | 9e-31 |
| NLLENSTLEDGLAGWAAVGECTALSVHNEEPEKVPTETINTVADDYKPSGRYILAAGRAGEEDGLRRAVAGALKPRVTYRVAGWISLGDGAEGSHPVRVN LRLDDDDECVVEGGAVCAQAGRWTEIKGAFRLKASPCGATVFVQG | |||
| GH10 | 211 | 499 | 0 |
| VMQMDSSFPFGACINGGVIQNPAFVDFFTKHFDWAVFENELKWYWTEAQQGQLNYADADALLDFCDRYGKPVRGHCIFWAVDNVVQQWIKGLDHDQLTAA VQGRLTGLLTRYAGRFPHYDVNNEMLHGSFYQDRLGDDINAFMFRETARLDPGATLFVNDYNVEGGNDPNATPEKYIEQITALQQKGAAVGGIGLQGHVT NPVGEVICDALDKLATTDLPVWLTELDVCESDVDLRADDLEVVLREAYAHPAVEGVMFWGFMQGHMWRQDACLVNSDGTVNDAGERFID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 558 Download |
| MACTKGVVFD VNLLENSTLE DGLAGWAAVG ECTALSVHNE EPEKVPTETI NTVADDYKPS 60 GRYILAAGRA GEEDGLRRAV AGALKPRVTY RVAGWISLGD GAEGSHPVRV NLRLDDDDEC 120 VVEGGAVCAQ AGRWTEIKGA FRLKASPCGA TVFVQGAPDG VDVKVMDLQI FATDRRARFR 180 KLRKKTDKVR KRDVVLKFGG AGSISGASVR VMQMDSSFPF GACINGGVIQ NPAFVDFFTK 240 HFDWAVFENE LKWYWTEAQQ GQLNYADADA LLDFCDRYGK PVRGHCIFWA VDNVVQQWIK 300 GLDHDQLTAA VQGRLTGLLT RYAGRFPHYD VNNEMLHGSF YQDRLGDDIN AFMFRETARL 360 DPGATLFVND YNVEGGNDPN ATPEKYIEQI TALQQKGAAV GGIGLQGHVT NPVGEVICDA 420 LDKLATTDLP VWLTELDVCE SDVDLRADDL EVVLREAYAH PAVEGVMFWG FMQGHMWRQD 480 ACLVNSDGTV NDAGERFIDL RREWTSHARG HIDGDGHFKF RGFHGTYVVQ LATATGKMHK 540 TFTVEKGDTP LVLDMDV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 2.0e-5 | 11 | 159 | 153 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 4.0e-34 | 199 | 479 | 303 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-73 | 216 | 499 | 307 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 9.0e-76 | 251 | 497 | 271 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005618 | cell wall |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN28310.1 | 0 | 1 | 557 | 1 | 565 | unknown [Zea mays] |
| GenBank | EAY72426.1 | 0 | 1 | 557 | 1 | 557 | hypothetical protein OsI_00280 [Oryza sativa Indica Group] |
| RefSeq | NP_001041947.1 | 0 | 1 | 557 | 1 | 557 | Os01g0134900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001147907.1 | 0 | 1 | 557 | 1 | 566 | LOC100281517 [Zea mays] |
| RefSeq | XP_002455241.1 | 0 | 1 | 557 | 1 | 564 | hypothetical protein SORBIDRAFT_03g006950 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1i1x_A | 9e-29 | 248 | 491 | 46 | 289 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 1i1w_A | 9e-29 | 248 | 491 | 46 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1tux_A | 9e-29 | 248 | 491 | 46 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 3e-28 | 241 | 491 | 39 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1xyz_B | 3e-28 | 203 | 477 | 22 | 313 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CB647597 | 278 | 95 | 372 | 0 |
| GT807565 | 233 | 326 | 558 | 0 |
| GO850973 | 330 | 141 | 468 | 0 |
| FL874412 | 259 | 204 | 462 | 0 |
| FL860597 | 241 | 271 | 508 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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