| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g04920.1 |
| Family | GT4 |
| Protein Properties | Length: 515 Molecular Weight: 57975.3 Isoelectric Point: 7.2342 |
| Chromosome | Chromosome/Scaffold: 1 Start: 2275067 End: 2278872 |
| Description | sulfoquinovosyldiacylglycerol 2 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GT4 | 305 | 453 | 2.2e-35 |
| EPEKPLIIHVGRFGREKNLDFLKTVMDRLPGVRIAFIGDGPYRSELEKMFEGMPAVFTGMMQGEELSQAYASGDVFVMPSESETLGQVVLESMSSGVPVV AARAGGVPDIIPEDQEGKTSFLFTPGDLEDCLGKIQLLLTDKEFRDNMG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 515 Download |
| MEYPPQFPTP QLHTPISSSS SSSSSPRLYT RRVELLLLLF LAPPQHRRLE AHANAGSEEK 60 DCFFFFFCVC AVFLGFLAMV IGAEIKDEME EAPPLLLDEA ARPRRVALFV EPSPFAYISG 120 YKNRFQNFIK HLREMGDEVI VVTNHEGVPQ EFHGAKVIGS WSFPCPMYGK VPLSLALSPR 180 IISEVAKFKP DIIHASSPGI MVFGALAIAK LLGVPLVMSY HTHVPVYIPR YTFSWLVEPM 240 WQVIRFLHRA ADLTLVPSVA ISKDFETAHV ISANRIRLWN KGVDSASFHP KFRSHEMRVR 300 LSDGEPEKPL IIHVGRFGRE KNLDFLKTVM DRLPGVRIAF IGDGPYRSEL EKMFEGMPAV 360 FTGMMQGEEL SQAYASGDVF VMPSESETLG QVVLESMSSG VPVVAARAGG VPDIIPEDQE 420 GKTSFLFTPG DLEDCLGKIQ LLLTDKEFRD NMGMTARAEM EKCDWRAASK KIRNEFYNAA 480 IWYWRKKRAE LIKPLQWLAQ MFLPAPEVNR ITQH* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03798 | GT1_wlbH_like | 1.0e-34 | 106 | 480 | 395 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| TIGR00032 | argG | 4.0e-51 | 105 | 458 | 366 | + argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria [Amino acid biosynthesis, Glutamate family]. | ||
| cd03801 | GT1_YqgM_like | 7.0e-53 | 105 | 477 | 383 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| TIGR00009 | L28 | 2.0e-107 | 105 | 468 | 367 | + ribosomal protein L28. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture and are not included [Protein synthesis, Ribosomal proteins: synthesis and modification]. | ||
| PLN02871 | PLN02871 | 0 | 78 | 510 | 434 | + UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0006629 | lipid metabolic process |
| GO:0006950 | response to stress |
| GO:0007154 | cell communication |
| GO:0008152 | metabolic process |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY72486.1 | 0 | 79 | 514 | 1 | 436 | hypothetical protein OsI_00342 [Oryza sativa Indica Group] |
| RefSeq | NP_001041991.1 | 0 | 79 | 514 | 1 | 436 | Os01g0142300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001144658.1 | 0 | 82 | 513 | 5 | 436 | hypothetical protein LOC100277683 [Zea mays] |
| RefSeq | XP_002309122.1 | 0 | 83 | 507 | 7 | 433 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002457385.1 | 0 | 90 | 513 | 6 | 429 | hypothetical protein SORBIDRAFT_03g006480 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jjm_L | 0.00000000000001 | 130 | 483 | 38 | 383 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_K | 0.00000000000001 | 130 | 483 | 38 | 383 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_J | 0.00000000000001 | 130 | 483 | 38 | 383 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_I | 0.00000000000001 | 130 | 483 | 38 | 383 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 2jjm_H | 0.00000000000001 | 130 | 483 | 38 | 383 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
