| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g19170.1 |
| Family | GH28 |
| Protein Properties | Length: 504 Molecular Weight: 52056.3 Isoelectric Point: 6.9851 |
| Chromosome | Chromosome/Scaffold: 1 Start: 10830045 End: 10831911 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 135 | 473 | 0 |
| WDTACADDGAGVVLAAAGRSFLIHTTVFTGPCQGSVTLQVDGTIVAPSEPATWPANNKRNWLVFYRADGVSLVGAGLIDGKGQKWWDLPCKPHKGGNTHG PCDSPVAMRFAISNNVTVRGLKVQNSPEFHFRFDNCNGVRVDGLSISSPALSPNTDGIHVENTSDVLITNTVVSNGDDCVSIGAGTLNVHIENVTCGPGH GISIGSLGKAGTKACVANVTVRNAVIRHSDNGVRIKTWQGGSGSVSAVAFENVRMDAVRNPIIIDQYYCLSKSCENETTAVFVNGVSYSGIRGTYDVRGP PIHFGCSDAVPCTNITLSDVELLPASGDTVDEPFCWNVY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 504 Download |
| MELAAAGRTA AIALLLALAF ASSFISAADG ARSARHHHAK HAKRNAAHPP SQAPGPAARH 60 APGPARHHGA PAPHPGRRSP PAPAPANPPS SDPMPGGAPS AAPAAGAATV YDIVKDFGAA 120 GDGVTDDTDA LKTAWDTACA DDGAGVVLAA AGRSFLIHTT VFTGPCQGSV TLQVDGTIVA 180 PSEPATWPAN NKRNWLVFYR ADGVSLVGAG LIDGKGQKWW DLPCKPHKGG NTHGPCDSPV 240 AMRFAISNNV TVRGLKVQNS PEFHFRFDNC NGVRVDGLSI SSPALSPNTD GIHVENTSDV 300 LITNTVVSNG DDCVSIGAGT LNVHIENVTC GPGHGISIGS LGKAGTKACV ANVTVRNAVI 360 RHSDNGVRIK TWQGGSGSVS AVAFENVRMD AVRNPIIIDQ YYCLSKSCEN ETTAVFVNGV 420 SYSGIRGTYD VRGPPIHFGC SDAVPCTNIT LSDVELLPAS GDTVDEPFCW NVYGNAATPT 480 VPPVSCLSSG FPNYTEKKDL QCY* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-67 | 154 | 483 | 334 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 2.0e-72 | 154 | 488 | 341 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 8.0e-79 | 131 | 456 | 329 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-88 | 155 | 456 | 303 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 6.0e-109 | 132 | 489 | 360 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD86981.1 | 0 | 94 | 503 | 1 | 410 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAY73623.1 | 0 | 1 | 503 | 1 | 503 | hypothetical protein OsI_01510 [Oryza sativa Indica Group] |
| RefSeq | NP_001042805.1 | 0 | 1 | 503 | 1 | 503 | Os01g0296200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150436.1 | 0 | 109 | 503 | 99 | 499 | polygalacturonase [Zea mays] |
| RefSeq | XP_002455500.1 | 0 | 1 | 503 | 1 | 506 | hypothetical protein SORBIDRAFT_03g012280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 5e-25 | 204 | 472 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-25 | 204 | 472 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-25 | 204 | 472 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 5e-25 | 204 | 472 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 5e-25 | 204 | 472 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
