| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g19220.1 |
| Family | GH3 |
| Protein Properties | Length: 819 Molecular Weight: 87128.6 Isoelectric Point: 5.0369 |
| Chromosome | Chromosome/Scaffold: 1 Start: 10871371 End: 10874265 |
| Description | beta-D-xylosidase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 98 | 360 | 0 |
| APRVGLPRYLWWGEALHGVSDVGPGGTWFGDAVPGATSFPLVINSAASFNETLWRAIGGVVSTEIRAMYNLGHAELTYWSPNINVVRDPRWGRASETPGE DPFVVGRYAVNFVRGMQDIDGATTAASAAAATDAFSRPIKVSSCCKHYAAYDVDAWNGTDRLTFDARVQERDMVETFERPFEMCIRDGDASCVMCSYNRI NGVPACADARLLTETVRRDWQLHGYIVSDCDSVRVMVRDAKWLGYTGVEATAAAMKAGLDLDC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 819 Download |
| MAASSSPRRL GFLAALVFAV SVSASVSSVS GGSGPITTNG GNYTRVCDPA RFAAAGLDMA 60 GFPYCDASLP YADRVRDLVG RMTLEEKVAN LGDRAGGAPR VGLPRYLWWG EALHGVSDVG 120 PGGTWFGDAV PGATSFPLVI NSAASFNETL WRAIGGVVST EIRAMYNLGH AELTYWSPNI 180 NVVRDPRWGR ASETPGEDPF VVGRYAVNFV RGMQDIDGAT TAASAAAATD AFSRPIKVSS 240 CCKHYAAYDV DAWNGTDRLT FDARVQERDM VETFERPFEM CIRDGDASCV MCSYNRINGV 300 PACADARLLT ETVRRDWQLH GYIVSDCDSV RVMVRDAKWL GYTGVEATAA AMKAGLDLDC 360 GMFWEGVHDF FTTYGVDAVR QGKLKESAVD NALTNLYLTL MRLGFFDGIP ELESLGAADV 420 CTEEHKELAA DAARQGMVLL KNDAALLPLS PEKVNSVALF GQLQHINATD VMLGDYRGKP 480 CRVVTPYDGV RKVVSSTSVH ACDKGSCDTA AAAAKTVDAT IVVAGLNMSV ERESNDREDL 540 LLPWSQASWI NAVAEASPSP IVLVIMSAGG VDVSFAQDNP KIGAVVWAGY PGEEGGTAIA 600 DVLFGKYNPG GRLPLTWYKN EYVSKIPMTS MALRPDAEHG YPGRTYKFYG GADVLYPFGH 660 GLSYTNFTYA SATAAAPVTV KVGAWEYCKQ LTYKAGVSSP PACPAVNVAS HACQEEVSFA 720 VTVANTGGRD GTHVVPMYTA PPAEVDGAPR KQLVAFRRVR VAAGAAVEVA FALNVCKAFA 780 IVEETAYTVV PSGVSRVLVG DDALSLSFPV QIDLQAAA* 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1472 | BglX | 8.0e-45 | 97 | 480 | 389 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam01915 | Glyco_hydro_3_C | 1.0e-50 | 437 | 665 | 239 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| pfam00933 | Glyco_hydro_3 | 6.0e-51 | 83 | 397 | 341 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| PRK15098 | PRK15098 | 2.0e-59 | 134 | 753 | 667 | + beta-D-glucoside glucohydrolase; Provisional | ||
| PLN03080 | PLN03080 | 0 | 62 | 807 | 760 | + Probable beta-xylosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005618 | cell wall |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB55751.1 | 0 | 1 | 818 | 1 | 818 | putative alpha-L-arabinofuranosidase/beta-D- xylosidase isoenzyme ARA-I [Oryza sativa Japonica Group] |
| GenBank | EEE54394.1 | 0 | 1 | 818 | 1 | 776 | hypothetical protein OsJ_01415 [Oryza sativa Japonica Group] |
| RefSeq | NP_001042806.1 | 0 | 297 | 818 | 1 | 522 | Os01g0296700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001146482.1 | 0 | 35 | 814 | 51 | 833 | hypothetical protein LOC100280070 [Zea mays] |
| RefSeq | XP_002455502.1 | 0 | 34 | 814 | 38 | 823 | hypothetical protein SORBIDRAFT_03g012290 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 0 | 176 | 773 | 128 | 696 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3u48_A | 0 | 176 | 773 | 128 | 696 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3u4a_B | 0 | 176 | 773 | 128 | 696 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3u4a_A | 0 | 176 | 773 | 128 | 696 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3zz1_A | 9.99995e-41 | 132 | 800 | 71 | 698 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
