Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os01g19440.1 |
Family | CE8 |
Protein Properties | Length: 336 Molecular Weight: 35671.4 Isoelectric Point: 8.3473 |
Chromosome | Chromosome/Scaffold: 1 Start: 10997593 End: 10999294 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 42 | 320 | 0 |
IFVSKKGSGADFTRIQDAINSVPFANRRWIRIHIAAGVYKEKVSIPANKSFILLEGEGRQQTSIEWADHAGGGGGDSGTADSPTFASYAADFMARDITFK NTYGRMAPAVAALVAGDRSAFYRCGFVGLQDTLSDLLGRHYYERCYVEGAVDFIFGEAQSIFHRCHISTAAAAAPGFITAQGRSSASDASGFVFTSCTVG GAAPAYLGRAWRAYARVVFYRTAMSAAVVGLGWDAWDYKGKEETLEMVESGCTGPGSNRTGRVPWEKTLSGEELAKLVD |
Full Sequence |
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Protein Sequence Length: 336 Download |
MKQVLAPIIA LVIGIGTLAF MAISPQVCHA AAGGSATVAR SIFVSKKGSG ADFTRIQDAI 60 NSVPFANRRW IRIHIAAGVY KEKVSIPANK SFILLEGEGR QQTSIEWADH AGGGGGDSGT 120 ADSPTFASYA ADFMARDITF KNTYGRMAPA VAALVAGDRS AFYRCGFVGL QDTLSDLLGR 180 HYYERCYVEG AVDFIFGEAQ SIFHRCHIST AAAAAPGFIT AQGRSSASDA SGFVFTSCTV 240 GGAAPAYLGR AWRAYARVVF YRTAMSAAVV GLGWDAWDYK GKEETLEMVE SGCTGPGSNR 300 TGRVPWEKTL SGEELAKLVD ISYVSRDGWL AAQPR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02480 | PLN02480 | 6.0e-84 | 40 | 332 | 306 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-87 | 30 | 330 | 301 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-90 | 31 | 330 | 309 | + pectinesterase family protein | ||
PLN02176 | PLN02176 | 8.0e-95 | 33 | 334 | 314 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 3.0e-114 | 32 | 334 | 315 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0005623 | cell |
GO:0008150 | biological_process |
GO:0008152 | metabolic process |
GO:0016787 | hydrolase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 40 | 334 | 43 | 341 | unnamed protein product [Vitis vinifera] |
GenBank | EAY73651.1 | 0 | 28 | 335 | 28 | 335 | hypothetical protein OsI_01540 [Oryza sativa Indica Group] |
GenBank | EAZ11567.1 | 0 | 28 | 335 | 28 | 284 | hypothetical protein OsJ_01434 [Oryza sativa Japonica Group] |
RefSeq | XP_002263748.1 | 0 | 18 | 334 | 12 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002455508.1 | 0 | 28 | 335 | 31 | 338 | hypothetical protein SORBIDRAFT_03g012410 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 35 | 332 | 2 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-35 | 44 | 306 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 1e-18 | 36 | 283 | 1 | 288 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 1e-18 | 36 | 283 | 1 | 288 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 1e-18 | 36 | 283 | 1 | 288 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |