| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g33300.1 |
| Family | GH28 |
| Protein Properties | Length: 408 Molecular Weight: 42991.1 Isoelectric Point: 6.2777 |
| Chromosome | Chromosome/Scaffold: 1 Start: 18352818 End: 18354506 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 69 | 395 | 0 |
| DAACGLAGSQKVVIPKGEFMTGPLNFSGPCKGYVTVQIDGTMFGSNDIPKYNKGNWIEILHIDNVLVNGSGTLDGQGAAVWKDECKILPNTLVLDYVKNG TVSGLKLVNAKFFHINVYMSKGVTIKNVTITAVANSPNTDGVHIGDSSEISVSDATIATGDDCISVGPGSSRISIQGITCGPGQGISVGCLGRFKDEKDV TDVTVRDCVLRNTSNGVRIKSYEDVLSPITASRLTFENIRMDGVANPVIVDQKYCPEKDCPEKKGSKTVTIKNVTFRNITGTSNTPEAVSLLCSDQLPCS GMELLDVNLKYDGKDNKTMAVCTNAKG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 408 Download |
| MAVTMDNVIR FMFILSVVYG AAYAKKSEAK VASAPGLAAA VNTVFDITEL GAVADGKTDS 60 TKAVQDAWDA ACGLAGSQKV VIPKGEFMTG PLNFSGPCKG YVTVQIDGTM FGSNDIPKYN 120 KGNWIEILHI DNVLVNGSGT LDGQGAAVWK DECKILPNTL VLDYVKNGTV SGLKLVNAKF 180 FHINVYMSKG VTIKNVTITA VANSPNTDGV HIGDSSEISV SDATIATGDD CISVGPGSSR 240 ISIQGITCGP GQGISVGCLG RFKDEKDVTD VTVRDCVLRN TSNGVRIKSY EDVLSPITAS 300 RLTFENIRMD GVANPVIVDQ KYCPEKDCPE KKGSKTVTIK NVTFRNITGT SNTPEAVSLL 360 CSDQLPCSGM ELLDVNLKYD GKDNKTMAVC TNAKGISKGS LQALACL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 3.0e-77 | 37 | 407 | 378 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-81 | 43 | 401 | 371 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 9.0e-91 | 44 | 407 | 378 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-102 | 72 | 394 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-117 | 9 | 394 | 394 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG34252.1 | 0 | 1 | 407 | 1 | 427 | exopolygalacturonase precursor [Zea mays] |
| GenBank | EAY74295.1 | 0 | 1 | 407 | 1 | 407 | hypothetical protein OsI_02183 [Oryza sativa Indica Group] |
| RefSeq | NP_001043199.1 | 0 | 1 | 407 | 1 | 407 | Os01g0517500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141594.1 | 0 | 1 | 407 | 1 | 427 | hypothetical protein LOC100273711 [Zea mays] |
| RefSeq | XP_002455693.1 | 0 | 7 | 407 | 6 | 412 | hypothetical protein SORBIDRAFT_03g021050 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 6e-21 | 141 | 377 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 6e-21 | 141 | 377 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 6e-21 | 141 | 377 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 6e-21 | 141 | 377 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 6e-21 | 141 | 377 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
