| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g36620.1 |
| Family | PL1 |
| Protein Properties | Length: 365 Molecular Weight: 39529.4 Isoelectric Point: 7.5682 |
| Chromosome | Chromosome/Scaffold: 1 Start: 20317862 End: 20319378 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 98 | 277 | 0 |
| IVFDVSGDIHLRTYLRVTSHKTIDGRGQRVRLLGKGLQLKECRHVIVCNLQIEGGRGHDVDAIQIKPSSADIWIDRCSLADCDDGLVDITRGSTDVTVSR CRFSRHDKTMLVGADPSHTGDRGIRVTVHHCFFDGTRQRHPRVRFGRAHLYNNYTRGWGIYAVAAGVEAQVASQCNVYEA | |||
| Full Sequence |
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| Protein Sequence Length: 365 Download |
| MGASCSSPFP PPPSPAESNA PSASAMHHPP HPAAGGGGPV MPYADADRTL RALAGAAEGF 60 GRRAIGGLHG PLYRVTSLDD DGHGTLRQAC RAHGPLWIVF DVSGDIHLRT YLRVTSHKTI 120 DGRGQRVRLL GKGLQLKECR HVIVCNLQIE GGRGHDVDAI QIKPSSADIW IDRCSLADCD 180 DGLVDITRGS TDVTVSRCRF SRHDKTMLVG ADPSHTGDRG IRVTVHHCFF DGTRQRHPRV 240 RFGRAHLYNN YTRGWGIYAV AAGVEAQVAS QCNVYEAGAE RKAVFRYVPE RAADREEAEA 300 GWVRSEGDAF LNGARPCLVD GGDAAVFRPE EYYERWTMEA ASPALKEVVQ LCAGWQPVPR 360 PPGE* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 5.0e-40 | 99 | 275 | 197 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 2.0e-45 | 66 | 280 | 234 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 7.0e-65 | 112 | 278 | 179 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN25563.1 | 0 | 28 | 364 | 26 | 365 | unknown [Zea mays] |
| GenBank | EAY74463.1 | 0 | 1 | 364 | 1 | 364 | hypothetical protein OsI_02351 [Oryza sativa Indica Group] |
| RefSeq | NP_001043284.1 | 0 | 1 | 364 | 1 | 364 | Os01g0546800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001149991.1 | 0 | 28 | 362 | 24 | 361 | LOC100283618 [Zea mays] |
| RefSeq | XP_002442919.1 | 0 | 40 | 361 | 39 | 362 | hypothetical protein SORBIDRAFT_08g004905 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 44 | 314 | 12 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 44 | 314 | 12 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-30 | 64 | 349 | 21 | 323 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 8e-25 | 109 | 275 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 8e-23 | 94 | 355 | 61 | 352 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JG177860 | 305 | 58 | 361 | 0 |
| DY275282 | 322 | 41 | 361 | 0 |
| DW066041 | 301 | 62 | 361 | 0 |
| DY277275 | 311 | 41 | 350 | 0 |
| DY289690 | 303 | 41 | 338 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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