| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g36830.1 |
| Family | GH28 |
| Protein Properties | Length: 383 Molecular Weight: 40300.7 Isoelectric Point: 8.5327 |
| Chromosome | Chromosome/Scaffold: 1 Start: 20486362 End: 20488635 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 43 | 335 | 0 |
| SEIDGDVLAPPGMGYWPKARRPLQWLNFKWLDGFTIQGTGTVDGQSTLLRSVSPANVSQHWYVSGVKPTLIRFYSSFNVSVRNIRITNSPQCHLKFDSSG GIKVKNITISSPGDSLNTDGIHLQNTRDVDIRSSSIGCGDDCISIQTGCSNVHMKNINCNPGHGISLGGLGKDNSLACVSDVFAEHINVENALYGVRIKT WQGGKGTVRNVTFSNVRVANVATPIAIDQFYCDAGGGGARCGNRSDAVGITGVAYRRVAGTYTYQPVRLACSDARPCTGVSMADVRLSPASAT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 383 Download |
| MLIAGAILCL VASTAPAPAL SAGRTTFSVS SFGAAGNGIA DDSEIDGDVL APPGMGYWPK 60 ARRPLQWLNF KWLDGFTIQG TGTVDGQSTL LRSVSPANVS QHWYVSGVKP TLIRFYSSFN 120 VSVRNIRITN SPQCHLKFDS SGGIKVKNIT ISSPGDSLNT DGIHLQNTRD VDIRSSSIGC 180 GDDCISIQTG CSNVHMKNIN CNPGHGISLG GLGKDNSLAC VSDVFAEHIN VENALYGVRI 240 KTWQGGKGTV RNVTFSNVRV ANVATPIAID QFYCDAGGGG ARCGNRSDAV GITGVAYRRV 300 AGTYTYQPVR LACSDARPCT GVSMADVRLS PASATGAGGL RQPLCWKSYG EAMGMIEPTG 360 IACLQRSNGF VMPLTKPFNY TC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 9.0e-50 | 44 | 330 | 290 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-55 | 27 | 367 | 386 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 4.0e-61 | 25 | 335 | 365 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-62 | 64 | 335 | 273 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-75 | 27 | 371 | 394 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD88046.1 | 0 | 1 | 382 | 1 | 372 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAY74476.1 | 0 | 1 | 382 | 1 | 382 | hypothetical protein OsI_02367 [Oryza sativa Indica Group] |
| GenBank | EEE54776.1 | 0 | 1 | 199 | 1 | 243 | hypothetical protein OsJ_02171 [Oryza sativa Japonica Group] |
| GenBank | EEE54776.1 | 0 | 74 | 382 | 204 | 500 | hypothetical protein OsJ_02171 [Oryza sativa Japonica Group] |
| RefSeq | XP_002457998.1 | 0 | 17 | 382 | 21 | 420 | hypothetical protein SORBIDRAFT_03g025260 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-20 | 78 | 333 | 113 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.000000000000001 | 109 | 303 | 99 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000000000001 | 109 | 303 | 99 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000000000001 | 109 | 303 | 99 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.000000000000001 | 109 | 303 | 99 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
