| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g43160.1 |
| Family | GH28 |
| Protein Properties | Length: 446 Molecular Weight: 47213.3 Isoelectric Point: 6.8391 |
| Chromosome | Chromosome/Scaffold: 1 Start: 24629270 End: 24632332 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 75 | 418 | 0 |
| PGGALLYVPPGVWLTGPFNLTSHMTLFLARGAVIRATQDTSSWPLIEPLPSYGRGRELPGGRYMSLIHGNGLQDVVITGDNGTIDGQGSAWWDMWKKGTL PFTRPHLLELMNSSDVVVSNVVFQDSPFWNIHPVYCSNVVIRNVTVLAPHDSPNTDGIDPDSSSNVCIEDCYISTGDDLIAIKSGWDEYGMAYGRPSSHI TIRRITGSSPFAGFAVGSETSGGVEHVLAEHLNFFSSGFGIHIKTNTGRGGFIRNVTVSDVTLDSVRYGLRIAGDVGGHPDDRYDRNALPVVDGLTIKNV QGQNIREAGSIKGIATSAFSRICLSNVKLNGGAAVRPWKCEAVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 446 Download |
| MGRQRWWLLL AVAAAAAVVV GAGAQETCSD MVPAAPRRGA WMSLASFGGG GGDGRTLSTA 60 AFQAAVASIE RRRAPGGALL YVPPGVWLTG PFNLTSHMTL FLARGAVIRA TQDTSSWPLI 120 EPLPSYGRGR ELPGGRYMSL IHGNGLQDVV ITGDNGTIDG QGSAWWDMWK KGTLPFTRPH 180 LLELMNSSDV VVSNVVFQDS PFWNIHPVYC SNVVIRNVTV LAPHDSPNTD GIDPDSSSNV 240 CIEDCYISTG DDLIAIKSGW DEYGMAYGRP SSHITIRRIT GSSPFAGFAV GSETSGGVEH 300 VLAEHLNFFS SGFGIHIKTN TGRGGFIRNV TVSDVTLDSV RYGLRIAGDV GGHPDDRYDR 360 NALPVVDGLT IKNVQGQNIR EAGSIKGIAT SAFSRICLSN VKLNGGAAVR PWKCEAVSGA 420 ALDVQPSPCT ELTSTSGMSF CTNSL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-18 | 59 | 430 | 403 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 1.0e-21 | 141 | 341 | 205 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-29 | 146 | 434 | 301 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-34 | 141 | 417 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-56 | 55 | 384 | 373 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY74990.1 | 0 | 1 | 445 | 1 | 445 | hypothetical protein OsI_02888 [Oryza sativa Indica Group] |
| GenBank | EAY99223.1 | 0 | 36 | 443 | 42 | 448 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
| GenBank | EAZ12715.1 | 0 | 1 | 445 | 1 | 419 | hypothetical protein OsJ_02632 [Oryza sativa Japonica Group] |
| RefSeq | NP_001141464.1 | 0 | 24 | 445 | 26 | 446 | hypothetical protein LOC100273574 [Zea mays] |
| RefSeq | XP_002455965.1 | 0 | 26 | 445 | 29 | 447 | hypothetical protein SORBIDRAFT_03g028140 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 9.80909e-45 | 33 | 407 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 9.80909e-45 | 33 | 407 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 9.80909e-45 | 33 | 407 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 9.80909e-45 | 33 | 407 | 21 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 8e-18 | 58 | 340 | 25 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
