| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g43220.1 |
| Family | GH18 |
| Protein Properties | Length: 261 Molecular Weight: 29659.7 Isoelectric Point: 6.5969 |
| Chromosome | Chromosome/Scaffold: 1 Start: 24691392 End: 24697071 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH18 | 31 | 251 | 1.1e-27 |
| DKGYDGVVLESWSRWAVYGVLDDSELRNRALQFVKHLGKTLPLTSSNLSTHHHLKLIYVVPAPRMKELNNQEFRPEDLLQLADSVDGFSLMTYDFSGPQN PGPSAPLSWIQYSLKTLLAAKGSASHGHSHMIFLGINFYGNDFLLSKGDGGNAITGRDFIYLLDKYKPSLQWDEKSSEHFFVYSDKGLRHAVFYPTLMSL SLRLDEAQDWGTGLSIWEIGQ | |||
| Full Sequence |
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| Protein Sequence Length: 261 Download |
| MNAGKYLYCC MSRYCYSYNC QFVIWLSVNR DKGYDGVVLE SWSRWAVYGV LDDSELRNRA 60 LQFVKHLGKT LPLTSSNLST HHHLKLIYVV PAPRMKELNN QEFRPEDLLQ LADSVDGFSL 120 MTYDFSGPQN PGPSAPLSWI QYSLKTLLAA KGSASHGHSH MIFLGINFYG NDFLLSKGDG 180 GNAITGRDFI YLLDKYKPSL QWDEKSSEHF FVYSDKGLRH AVFYPTLMSL SLRLDEAQDW 240 GTGLSIWEIG QGLDYFFDVL * 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00704 | Glyco_hydro_18 | 4.0e-8 | 83 | 251 | 189 | + Glycosyl hydrolases family 18. | ||
| COG3858 | COG3858 | 1.0e-17 | 57 | 260 | 214 | + Predicted glycosyl hydrolase [General function prediction only] | ||
| cd02874 | GH18_CFLE_spore_hydrolase | 2.0e-18 | 26 | 260 | 248 | + Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis. | ||
| smart00636 | Glyco_18 | 1.0e-18 | 30 | 251 | 250 | + Glyco_18 domain. | ||
| cd02876 | GH18_SI-CLP | 5.0e-113 | 16 | 260 | 245 | + Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG34172.1 | 0 | 24 | 260 | 194 | 430 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
| GenBank | EEC71106.1 | 0 | 30 | 260 | 205 | 435 | hypothetical protein OsI_02892 [Oryza sativa Indica Group] |
| GenBank | EEE55003.1 | 0 | 30 | 260 | 205 | 435 | hypothetical protein OsJ_02637 [Oryza sativa Japonica Group] |
| RefSeq | NP_001043596.1 | 0 | 1 | 260 | 1 | 260 | Os01g0619800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130247.1 | 0 | 24 | 260 | 194 | 430 | hypothetical protein LOC100191341 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3bxw_A | 2.99878e-43 | 26 | 260 | 178 | 393 | B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp |
| PDB | 3bxw_B | 2.99878e-43 | 26 | 260 | 178 | 393 | B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO791772 | 232 | 30 | 261 | 0 |
| FL831251 | 225 | 38 | 261 | 0 |
| HX143506 | 202 | 60 | 261 | 0 |
| AV931845 | 202 | 60 | 261 | 0 |
| JG906885 | 220 | 30 | 248 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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