| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g43490.1 |
| Family | GH28 |
| Protein Properties | Length: 419 Molecular Weight: 42567.5 Isoelectric Point: 4.9197 |
| Chromosome | Chromosome/Scaffold: 1 Start: 24899165 End: 24901813 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 69 | 407 | 0 |
| AWSAACRSPEPATVYVPDGEFFVSHSAFAGPCSGGRMTVQIDGTLVAPSGYTGSASSGGEWIVFDHVDGLTVSGGTLDGRGESLWACKAAGHGGCPDGAT SMKVLNSRDVVISGVKSVNSELYHVVIDGCEGVAVQDARIVAPGSSPNTDGIHVQSSSAVTITGASIQTGDDCISVGPGTSNLRVEHVSCGPGHGISIGS LGKESEEGGVENVTVSGAAFVGTENGLRIKTWGRAARSGAYVRGVVFEHALMRDVSNPIIIDQSYCPNDGGQGCPHQSSDVQISGVTYTDIQGSSASQVA VKFDCSASKPCSGLGLQDIKLTFDGGKPAEATCQHADGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 419 Download |
| MSVASSDPIS DNLVVFSRMA RCSVSRVVLL LLCCMHLSAA AAGAAVYNVE SYDARPDGRT 60 DASRALASAW SAACRSPEPA TVYVPDGEFF VSHSAFAGPC SGGRMTVQID GTLVAPSGYT 120 GSASSGGEWI VFDHVDGLTV SGGTLDGRGE SLWACKAAGH GGCPDGATSM KVLNSRDVVI 180 SGVKSVNSEL YHVVIDGCEG VAVQDARIVA PGSSPNTDGI HVQSSSAVTI TGASIQTGDD 240 CISVGPGTSN LRVEHVSCGP GHGISIGSLG KESEEGGVEN VTVSGAAFVG TENGLRIKTW 300 GRAARSGAYV RGVVFEHALM RDVSNPIIID QSYCPNDGGQ GCPHQSSDVQ ISGVTYTDIQ 360 GSSASQVAVK FDCSASKPCS GLGLQDIKLT FDGGKPAEAT CQHADGTASG VLMPPSCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-75 | 48 | 414 | 373 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-81 | 79 | 409 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 5.0e-82 | 46 | 418 | 380 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 5.0e-86 | 47 | 417 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 4.0e-123 | 46 | 418 | 373 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB21092.1 | 0 | 19 | 418 | 1 | 400 | polygalacturonase precursor-like [Oryza sativa Japonica Group] |
| GenBank | EAY75017.1 | 0 | 19 | 418 | 1 | 400 | hypothetical protein OsI_02915 [Oryza sativa Indica Group] |
| RefSeq | NP_001043617.1 | 0 | 1 | 418 | 1 | 418 | Os01g0623600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002458187.1 | 0 | 19 | 418 | 1 | 404 | hypothetical protein SORBIDRAFT_03g028380 [Sorghum bicolor] |
| RefSeq | XP_002529090.1 | 0 | 19 | 418 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-25 | 143 | 392 | 117 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 8e-19 | 141 | 397 | 76 | 325 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 8e-19 | 141 | 397 | 76 | 325 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 8e-19 | 141 | 397 | 76 | 325 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 8e-19 | 141 | 397 | 76 | 325 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
