| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os01g44970.1 |
| Family | GH28 |
| Protein Properties | Length: 539 Molecular Weight: 57668.1 Isoelectric Point: 8.1501 |
| Chromosome | Chromosome/Scaffold: 1 Start: 25513806 End: 25518242 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 163 | 489 | 0 |
| AAACKQGASTVVVPSELEFLVGPISFSGPYCKPNILFQLDGTIVAPTSAKAWGSGLLQWIEFTKLNGVSIQGNGIINGRGQQWWTYSDIDDDEDDDTQYD VEFERMPQVKPTALRFYGSFNVVVAGITIVNSSQCHLKFDSCQGVMVHDVTISSPENSLNTDGIHLQNSKDVSIHHTNLACGDDCVSIQTGCSNINIHNV NCGPGHGISIGGLGRDNTKACVSNVTVRDVNMFRTMTGVRIKTWQGGLGLVQDVRFSNIQVSEVQTPIIIDQFYCDKRTCSNQTSAVAVSGVQYENIRGT FTIKPVHFACSDSSPCSGITLTGVQLR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 539 Download |
| MKLRVKGLGL LLLLVLLALC STIDVCDARR GKHWRPRSSP SSSLLRNKGK GKKGSSNRQH 60 GSNRPSPKPP LSPPPSPGNG KGYQSPYQPS PSPSPNAPVS PSPVNGSGHA SPKSPTPSCG 120 KGNQPPSRPT PTSPQGAVFN VVDFGAKGDG VSDDTKAFEA AWAAACKQGA STVVVPSELE 180 FLVGPISFSG PYCKPNILFQ LDGTIVAPTS AKAWGSGLLQ WIEFTKLNGV SIQGNGIING 240 RGQQWWTYSD IDDDEDDDTQ YDVEFERMPQ VKPTALRFYG SFNVVVAGIT IVNSSQCHLK 300 FDSCQGVMVH DVTISSPENS LNTDGIHLQN SKDVSIHHTN LACGDDCVSI QTGCSNINIH 360 NVNCGPGHGI SIGGLGRDNT KACVSNVTVR DVNMFRTMTG VRIKTWQGGL GLVQDVRFSN 420 IQVSEVQTPI IIDQFYCDKR TCSNQTSAVA VSGVQYENIR GTFTIKPVHF ACSDSSPCSG 480 ITLTGVQLRP VQIPHYRLND PFCWQAFGEL YTPTVPPIAC LHLGKPAGNN LQSYHDLC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-59 | 136 | 488 | 358 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-59 | 139 | 489 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 6.0e-63 | 140 | 489 | 355 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-66 | 166 | 488 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-78 | 138 | 521 | 388 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN35722.1 | 0 | 1 | 538 | 1 | 541 | unknown [Zea mays] |
| RefSeq | NP_001043666.1 | 0 | 1 | 538 | 1 | 538 | Os01g0636500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148771.1 | 0 | 1 | 538 | 1 | 541 | polygalacturonase [Zea mays] |
| RefSeq | NP_001150912.1 | 0 | 20 | 538 | 20 | 536 | polygalacturonase [Zea mays] |
| RefSeq | XP_002456022.1 | 0 | 1 | 538 | 1 | 532 | hypothetical protein SORBIDRAFT_03g029030 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-26 | 166 | 444 | 36 | 321 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 7e-18 | 230 | 488 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 7e-18 | 230 | 488 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 7e-18 | 230 | 488 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 7e-18 | 230 | 488 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
